Feature identity
- Identifier
- PaHa04g20460.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,737 bp
- Genomic location
- 4:53,175,145–53,187,934
- Strand
- −
Hass · mRNA
PaHa04g20460.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,737
- bp
- 4:53,175,145–53,187,934
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa04g20460
- eggNOG
- Preferred name: MEKK1 | Seed ortholog: 337451.A0A443PHA2 | eggNOG OG: Pkinase|YV0T2T@131567, Pkinase|YV0T2T@2759
- Gene Ontology
- GO:0000165 MAPK cascade; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0004674 protein serine/threonine kinase activity; GO:0004709 MAP kinase kinase kinase activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005768 endosome; GO:0005886 plasma membrane; GO:0006970 response to osmotic stress; GO:0009409 response to cold; GO:0009507 chloroplast; GO:0009611 response to wounding; GO:0009631 cold acclimation; GO:0009651 response to salt stress; GO:0009941 chloroplast envelope; GO:0010200 response to chitin; GO:0010449 root meristem growth; GO:0019900 kinase binding; GO:0022622 root system development; GO:0031347 regulation of defense response; GO:0046777 protein autophosphorylation; GO:0106310 protein serine kinase activity; GO:1902065 response to L-glutamate
- KEGG
- EC: ec:2.7.11.25 | KO: K13414 | Pathway: 04016, 04626 | BRITE: 00001, 01000, 01001
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa04g20460.1-protein
derives_frommRNAPaHa04g20460.1
mRNAPaHa04g20460.1
part_ofgenePaHa04g20460
CDS
part_ofPaHa04g20460.1-CDS-4-1787993825:53175145..53175174mRNAPaHa04g20460.1
CDS
part_ofPaHa04g20460.1-CDS-4-1787993825:53176067..53176102mRNAPaHa04g20460.1
CDS
part_ofPaHa04g20460.1-CDS-4-1787993825:53176213..53176308mRNAPaHa04g20460.1
CDS
part_ofPaHa04g20460.1-CDS-4-1787993825:53176747..53176854mRNAPaHa04g20460.1
CDS
part_ofPaHa04g20460.1-CDS-4-1787993825:53179377..53179436mRNAPaHa04g20460.1
CDS
part_ofPaHa04g20460.1-CDS-4-1787993825:53179522..53179597mRNAPaHa04g20460.1
CDS
part_ofPaHa04g20460.1-CDS-4-1787993825:53181466..53181623mRNAPaHa04g20460.1
CDS
part_ofPaHa04g20460.1-CDS-4-1787993825:53182817..53182879mRNAPaHa04g20460.1
CDS
part_ofPaHa04g20460.1-CDS-4-1787993825:53183150..53183234mRNAPaHa04g20460.1
CDS
part_ofPaHa04g20460.1-CDS-4-1787993825:53186910..53187934mRNAPaHa04g20460.1
exon
part_ofPaHa04g20460.1-exon-4-1787993825:53175145..53175174mRNAPaHa04g20460.1
exon
part_ofPaHa04g20460.1-exon-4-1787993825:53176067..53176102mRNAPaHa04g20460.1
exon
part_ofPaHa04g20460.1-exon-4-1787993825:53176213..53176308mRNAPaHa04g20460.1
exon
part_ofPaHa04g20460.1-exon-4-1787993825:53176747..53176854mRNAPaHa04g20460.1
exon
part_ofPaHa04g20460.1-exon-4-1787993825:53179377..53179436mRNAPaHa04g20460.1
exon
part_ofPaHa04g20460.1-exon-4-1787993825:53179522..53179597mRNAPaHa04g20460.1
exon
part_ofPaHa04g20460.1-exon-4-1787993825:53181466..53181623mRNAPaHa04g20460.1
exon
part_ofPaHa04g20460.1-exon-4-1787993825:53182817..53182879mRNAPaHa04g20460.1
exon
part_ofPaHa04g20460.1-exon-4-1787993825:53183150..53183234mRNAPaHa04g20460.1
exon
part_ofPaHa04g20460.1-exon-4-1787993825:53186910..53187934mRNAPaHa04g20460.1
