Feature identity
- Identifier
- PaHa04g18110.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,068 bp
- Genomic location
- 4:50,051,792–50,055,477
- Strand
- +
Hass · mRNA
PaHa04g18110.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,068
- bp
- 4:50,051,792–50,055,477
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa04g18110
- eggNOG
- Preferred name: LOC116197707 | Seed ortholog: 337451.A0A3S3N8K4 | COG: S | eggNOG OG: Oxidored_FMN@131567|BRM-22, Oxidored_FMN@3193|LDZ-39, Oxidored_FMN@3398|UJB-54
- Gene Ontology
- GO:0000324 fungal-type vacuole; GO:0003959 NADPH dehydrogenase activity; GO:0005496 steroid binding; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005739 mitochondrion; GO:0005829 cytosol; GO:0006915 apoptotic process; GO:0008150 biological_process; GO:0008202 steroid metabolic process; GO:0009986 cell surface; GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor; GO:0030446 hyphal cell wall; GO:0035837 ergot alkaloid biosynthetic process; GO:0042562 hormone binding; GO:0071466 cellular response to xenobiotic stimulus; GO:0099130 estrogen binding; GO:0110095 cellular detoxification of aldehyde; GO:1900809 fumigaclavine C biosynthetic process; GO:1990748 cellular detoxification
- KEGG
- EC: ec:1.3.1.42 | KO: K05894 | Pathway: 00592, 01100, 01110 | Module: M00113 | BRITE: 00001, 01000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa04g18110.1-protein
derives_frommRNAPaHa04g18110.1
mRNAPaHa04g18110.1
part_ofgenePaHa04g18110
CDS
part_ofPaHa04g18110.1-CDS-4-1787993825:50051792..50051817mRNAPaHa04g18110.1
CDS
part_ofPaHa04g18110.1-CDS-4-1787993825:50052157..50052297mRNAPaHa04g18110.1
CDS
part_ofPaHa04g18110.1-CDS-4-1787993825:50053483..50053613mRNAPaHa04g18110.1
CDS
part_ofPaHa04g18110.1-CDS-4-1787993825:50054009..50054185mRNAPaHa04g18110.1
CDS
part_ofPaHa04g18110.1-CDS-4-1787993825:50054885..50055477mRNAPaHa04g18110.1
exon
part_ofPaHa04g18110.1-exon-4-1787993825:50051792..50051817mRNAPaHa04g18110.1
exon
part_ofPaHa04g18110.1-exon-4-1787993825:50052157..50052297mRNAPaHa04g18110.1
exon
part_ofPaHa04g18110.1-exon-4-1787993825:50053483..50053613mRNAPaHa04g18110.1
exon
part_ofPaHa04g18110.1-exon-4-1787993825:50054009..50054185mRNAPaHa04g18110.1
exon
part_ofPaHa04g18110.1-exon-4-1787993825:50054885..50055477mRNAPaHa04g18110.1
