Feature identity
- Identifier
- PaHa04g16350.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 693 bp
- Genomic location
- 4:47,947,748–47,951,227
- Strand
- +
Hass · mRNA
PaHa04g16350.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 693
- bp
- 4:47,947,748–47,951,227
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa04g16350
- eggNOG
- Preferred name: ILR3 | Seed ortholog: 337451.A0A443PI60 | COG: S | eggNOG OG: HLH@131567|BWE-22, HLH@3398|Izc-33
- Gene Ontology
- GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding; GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0001227 DNA-binding transcription repressor activity, RNA polymerase II-specific; GO:0003677 DNA binding; GO:0003682 chromatin binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0042802 identical protein binding; GO:0043565 sequence-specific DNA binding; GO:0046982 protein heterodimerization activity
- KEGG
- KO: K09114, K09115 | BRITE: 00001, 03000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa04g16350.1-protein
derives_frommRNAPaHa04g16350.1
mRNAPaHa04g16350.1
part_ofgenePaHa04g16350
CDS
part_ofPaHa04g16350.1-CDS-4-1787993825:47947748..47947854mRNAPaHa04g16350.1
CDS
part_ofPaHa04g16350.1-CDS-4-1787993825:47947939..47948001mRNAPaHa04g16350.1
CDS
part_ofPaHa04g16350.1-CDS-4-1787993825:47950019..47950096mRNAPaHa04g16350.1
CDS
part_ofPaHa04g16350.1-CDS-4-1787993825:47950366..47950528mRNAPaHa04g16350.1
CDS
part_ofPaHa04g16350.1-CDS-4-1787993825:47950946..47951227mRNAPaHa04g16350.1
exon
part_ofPaHa04g16350.1-exon-4-1787993825:47947748..47947854mRNAPaHa04g16350.1
exon
part_ofPaHa04g16350.1-exon-4-1787993825:47947939..47948001mRNAPaHa04g16350.1
exon
part_ofPaHa04g16350.1-exon-4-1787993825:47950019..47950096mRNAPaHa04g16350.1
exon
part_ofPaHa04g16350.1-exon-4-1787993825:47950366..47950528mRNAPaHa04g16350.1
exon
part_ofPaHa04g16350.1-exon-4-1787993825:47950946..47951227mRNAPaHa04g16350.1
