Feature identity
- Identifier
- PaHa04g16170.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 528 bp
- Genomic location
- 4:47,759,399–47,769,580
- Strand
- +
Hass · mRNA
PaHa04g16170.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 528
- bp
- 4:47,759,399–47,769,580
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa04g16170
- eggNOG
- Preferred name: ELF1 | Seed ortholog: 337451.A0A443PI70 | COG: COG4888 | eggNOG OG: Elf1@131567|A-1
- Gene Ontology
- GO:0000993 RNA polymerase II complex binding; GO:0003674 molecular_function; GO:0003677 DNA binding; GO:0003711 transcription elongation factor activity; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005694 chromosome; GO:0005730 nucleolus; GO:0006283 transcription-coupled nucleotide-excision repair; GO:0006325 chromatin organization; GO:0006355 regulation of DNA-templated transcription; GO:0006368 transcription elongation by RNA polymerase II; GO:0008023 transcription elongation factor complex; GO:0008150 biological_process; GO:0008270 zinc ion binding; GO:0030674 protein-macromolecule adaptor activity; GO:0042393 histone binding; GO:0045815 transcription initiation-coupled chromatin remodeling
- KEGG
- KO: K25829 | BRITE: 00001, 03400
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa04g16170.1-protein
derives_frommRNAPaHa04g16170.1
mRNAPaHa04g16170.1
part_ofgenePaHa04g16170
CDS
part_ofPaHa04g16170.1-CDS-4-1787993825:47759399..47759617mRNAPaHa04g16170.1
CDS
part_ofPaHa04g16170.1-CDS-4-1787993825:47761977..47762012mRNAPaHa04g16170.1
CDS
part_ofPaHa04g16170.1-CDS-4-1787993825:47768316..47768437mRNAPaHa04g16170.1
CDS
part_ofPaHa04g16170.1-CDS-4-1787993825:47768599..47768669mRNAPaHa04g16170.1
CDS
part_ofPaHa04g16170.1-CDS-4-1787993825:47769406..47769427mRNAPaHa04g16170.1
CDS
part_ofPaHa04g16170.1-CDS-4-1787993825:47769523..47769580mRNAPaHa04g16170.1
exon
part_ofPaHa04g16170.1-exon-4-1787993825:47759399..47759617mRNAPaHa04g16170.1
exon
part_ofPaHa04g16170.1-exon-4-1787993825:47761977..47762012mRNAPaHa04g16170.1
exon
part_ofPaHa04g16170.1-exon-4-1787993825:47768316..47768437mRNAPaHa04g16170.1
exon
part_ofPaHa04g16170.1-exon-4-1787993825:47768599..47768669mRNAPaHa04g16170.1
exon
part_ofPaHa04g16170.1-exon-4-1787993825:47769406..47769427mRNAPaHa04g16170.1
exon
part_ofPaHa04g16170.1-exon-4-1787993825:47769523..47769580mRNAPaHa04g16170.1
