Feature identity
- Identifier
- PaHa04g15540.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,461 bp
- Genomic location
- 4:46,679,407–46,685,477
- Strand
- −
Hass · mRNA
PaHa04g15540.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,461
- bp
- 4:46,679,407–46,685,477
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa04g15540
- eggNOG
- Preferred name: SDG40 | Seed ortholog: 337451.A0A443PIB9 | COG: S | eggNOG OG: Rubis-subs-bind@131567|d-5, SET@131567|BL-7, SET@2759|AOr-18
- Gene Ontology
- GO:0003674 molecular_function; GO:0003677 DNA binding; GO:0005515 protein binding; GO:0006338 chromatin remodeling; GO:0008150 biological_process; GO:0009416 response to light stimulus; GO:0009507 chloroplast; GO:0009658 chloroplast organization; GO:0009735 response to cytokinin; GO:0010027 thylakoid membrane organization; GO:0016279 protein-lysine N-methyltransferase activity; GO:0018023 peptidyl-lysine trimethylation; GO:0032755 positive regulation of interleukin-6 production; GO:0032760 positive regulation of tumor necrosis factor production; GO:0042254 ribosome biogenesis; GO:0042793 plastid transcription; GO:0042799 histone H4K20 methyltransferase activity; GO:0042800 histone H3K4 methyltransferase activity; GO:0050729 positive regulation of inflammatory response; GO:0071863 regulation of cell proliferation in bone marrow; GO:0140941 histone H4K20me methyltransferase activity; GO:0140944 histone H4K20 monomethyltransferase activity; GO:0140945 histone H3K4 monomethyltransferase activity
- KEGG
- EC: ec:2.1.1.127, ec:2.1.1.259, ec:2.1.1.364, ec:2.1.1.85 | KO: K00592, K05302, K07399, K19199, K27277, K27349 | BRITE: 00001, 01000, 03009, 03036, 04812
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa04g15540.1-protein
derives_frommRNAPaHa04g15540.1
mRNAPaHa04g15540.1
part_ofgenePaHa04g15540
CDS
part_ofPaHa04g15540.1-CDS-4-1787993825:46679407..46679443mRNAPaHa04g15540.1
CDS
part_ofPaHa04g15540.1-CDS-4-1787993825:46679521..46680074mRNAPaHa04g15540.1
CDS
part_ofPaHa04g15540.1-CDS-4-1787993825:46682073..46682363mRNAPaHa04g15540.1
CDS
part_ofPaHa04g15540.1-CDS-4-1787993825:46682829..46682969mRNAPaHa04g15540.1
CDS
part_ofPaHa04g15540.1-CDS-4-1787993825:46683111..46683242mRNAPaHa04g15540.1
CDS
part_ofPaHa04g15540.1-CDS-4-1787993825:46685026..46685173mRNAPaHa04g15540.1
CDS
part_ofPaHa04g15540.1-CDS-4-1787993825:46685320..46685477mRNAPaHa04g15540.1
exon
part_ofPaHa04g15540.1-exon-4-1787993825:46679407..46679443mRNAPaHa04g15540.1
exon
part_ofPaHa04g15540.1-exon-4-1787993825:46679521..46680074mRNAPaHa04g15540.1
exon
part_ofPaHa04g15540.1-exon-4-1787993825:46682073..46682363mRNAPaHa04g15540.1
exon
part_ofPaHa04g15540.1-exon-4-1787993825:46682829..46682969mRNAPaHa04g15540.1
exon
part_ofPaHa04g15540.1-exon-4-1787993825:46683111..46683242mRNAPaHa04g15540.1
exon
part_ofPaHa04g15540.1-exon-4-1787993825:46685026..46685173mRNAPaHa04g15540.1
exon
part_ofPaHa04g15540.1-exon-4-1787993825:46685320..46685477mRNAPaHa04g15540.1
