Feature identity
- Identifier
- PaHa04g13440.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 480 bp
- Genomic location
- 4:42,272,465–42,275,802
- Strand
- −
Hass · mRNA
PaHa04g13440.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 480
- bp
- 4:42,272,465–42,275,802
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa04g13440
- eggNOG
- Preferred name: LOC103702189 | Seed ortholog: 337451.A0A3S3PHF0 | COG: S | eggNOG OG: Maf1@2759|A-1
- Gene Ontology
- GO:0000994 RNA polymerase III core binding; GO:0001002 RNA polymerase III type 1 promoter sequence-specific DNA binding; GO:0001003 RNA polymerase III type 2 promoter sequence-specific DNA binding; GO:0001006 RNA polymerase III type 3 promoter sequence-specific DNA binding; GO:0003674 molecular_function; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005730 nucleolus; GO:0005737 cytoplasm; GO:0005829 cytosol; GO:0005886 plasma membrane; GO:0006366 transcription by RNA polymerase II; GO:0008150 biological_process; GO:0016479 negative regulation of transcription by RNA polymerase I; GO:0016480 negative regulation of transcription by RNA polymerase III; GO:0030424 axon; GO:0030425 dendrite; GO:0031981 nuclear lumen; GO:0048471 perinuclear region of cytoplasm; GO:0050811 GABA receptor binding; GO:0060077 inhibitory synapse; GO:0097014 ciliary plasm; GO:0106250 DNA-binding transcription repressor activity, RNA polymerase III-specific
- KEGG
- KO: K25817 | BRITE: 00001, 03021
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa04g13440.1-protein
derives_frommRNAPaHa04g13440.1
mRNAPaHa04g13440.1
part_ofgenePaHa04g13440
CDS
part_ofPaHa04g13440.1-CDS-4-1787993825:42272465..42272552mRNAPaHa04g13440.1
CDS
part_ofPaHa04g13440.1-CDS-4-1787993825:42273455..42273534mRNAPaHa04g13440.1
CDS
part_ofPaHa04g13440.1-CDS-4-1787993825:42273615..42273677mRNAPaHa04g13440.1
CDS
part_ofPaHa04g13440.1-CDS-4-1787993825:42274024..42274111mRNAPaHa04g13440.1
CDS
part_ofPaHa04g13440.1-CDS-4-1787993825:42274486..42274548mRNAPaHa04g13440.1
CDS
part_ofPaHa04g13440.1-CDS-4-1787993825:42274632..42274705mRNAPaHa04g13440.1
CDS
part_ofPaHa04g13440.1-CDS-4-1787993825:42275779..42275802mRNAPaHa04g13440.1
exon
part_ofPaHa04g13440.1-exon-4-1787993825:42272465..42272552mRNAPaHa04g13440.1
exon
part_ofPaHa04g13440.1-exon-4-1787993825:42273455..42273534mRNAPaHa04g13440.1
exon
part_ofPaHa04g13440.1-exon-4-1787993825:42273615..42273677mRNAPaHa04g13440.1
exon
part_ofPaHa04g13440.1-exon-4-1787993825:42274024..42274111mRNAPaHa04g13440.1
exon
part_ofPaHa04g13440.1-exon-4-1787993825:42274486..42274548mRNAPaHa04g13440.1
exon
part_ofPaHa04g13440.1-exon-4-1787993825:42274632..42274705mRNAPaHa04g13440.1
exon
part_ofPaHa04g13440.1-exon-4-1787993825:42275779..42275802mRNAPaHa04g13440.1
