Feature identity
- Identifier
- PaHa01g13780.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 879 bp
- Genomic location
- 1:22,066,833–22,069,238
- Strand
- −
Hass · mRNA
PaHa01g13780.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 879
- bp
- 1:22,066,833–22,069,238
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa01g13780
- eggNOG
- Preferred name: LOC108994334 | Seed ortholog: 337451.A0A443NLX0 | COG: S | eggNOG OG: Myb_DNA-binding@131567|AOS-27, Myb_DNA-binding@3193|IJi-41, Myb_DNA-binding@33090|DqE-36, Myb_DNA-binding@35493|HJx-40
- Gene Ontology
- GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0010090 trichome morphogenesis; GO:0043565 sequence-specific DNA binding; GO:0045892 negative regulation of DNA-templated transcription; GO:0045893 positive regulation of DNA-templated transcription; GO:0048481 plant ovule development; GO:0048629 trichome patterning; GO:0090377 seed trichome initiation; GO:0090378 seed trichome elongation
- KEGG
- KO: K09422 | BRITE: 00001, 03000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa01g13780.1-protein
derives_frommRNAPaHa01g13780.1
mRNAPaHa01g13780.1
part_ofgenePaHa01g13780
CDS
part_ofPaHa01g13780.1-CDS-1-1787993825:22066833..22067274mRNAPaHa01g13780.1
CDS
part_ofPaHa01g13780.1-CDS-1-1787993825:22067353..22067482mRNAPaHa01g13780.1
CDS
part_ofPaHa01g13780.1-CDS-1-1787993825:22067572..22067731mRNAPaHa01g13780.1
CDS
part_ofPaHa01g13780.1-CDS-1-1787993825:22069092..22069238mRNAPaHa01g13780.1
exon
part_ofPaHa01g13780.1-exon-1-1787993825:22066833..22067274mRNAPaHa01g13780.1
exon
part_ofPaHa01g13780.1-exon-1-1787993825:22067353..22067482mRNAPaHa01g13780.1
exon
part_ofPaHa01g13780.1-exon-1-1787993825:22067572..22067731mRNAPaHa01g13780.1
exon
part_ofPaHa01g13780.1-exon-1-1787993825:22069092..22069238mRNAPaHa01g13780.1
