Feature identity
- Identifier
- PaHa04g09570.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 525 bp
- Genomic location
- 4:32,012,983–32,020,247
- Strand
- −
Hass · mRNA
PaHa04g09570.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 525
- bp
- 4:32,012,983–32,020,247
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa04g09570
- eggNOG
- Preferred name: LOC104612638 | Seed ortholog: 337451.A0A443NRI1 | COG: COG0568 | eggNOG OG: Sigma70_r2@131567|AQM-18!, Sigma70_r2@33090|NGm-29, Sigma70_r2@58023|SCe-31, Sigma70_r3@131567|C-2!, Sigma70_r3@58023|El-10, Sigma70_r4@131567|Bnn-30
- Gene Ontology
- GO:0006352 DNA-templated transcription initiation; GO:0006399 tRNA metabolic process; GO:0009507 chloroplast; GO:0009658 chloroplast organization; GO:0010114 response to red light; GO:0016987 sigma factor activity; GO:0071482 cellular response to light stimulus; GO:2001141 regulation of RNA biosynthetic process
- KEGG
- EC: ec:6.1.1.7 | KO: K01872 | Pathway: 00970 | BRITE: 00001, 01000, 01007, 01613, 03016
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa04g09570.1-protein
derives_frommRNAPaHa04g09570.1
mRNAPaHa04g09570.1
part_ofgenePaHa04g09570
CDS
part_ofPaHa04g09570.1-CDS-4-1787993825:32012983..32013143mRNAPaHa04g09570.1
CDS
part_ofPaHa04g09570.1-CDS-4-1787993825:32013472..32013486mRNAPaHa04g09570.1
CDS
part_ofPaHa04g09570.1-CDS-4-1787993825:32019899..32020247mRNAPaHa04g09570.1
exon
part_ofPaHa04g09570.1-exon-4-1787993825:32012983..32013143mRNAPaHa04g09570.1
exon
part_ofPaHa04g09570.1-exon-4-1787993825:32013472..32013486mRNAPaHa04g09570.1
exon
part_ofPaHa04g09570.1-exon-4-1787993825:32019899..32020247mRNAPaHa04g09570.1
