Feature identity
- Identifier
- PaHa04g08600.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 3,123 bp
- Genomic location
- 4:25,079,869–25,141,510
- Strand
- −
Hass · mRNA
PaHa04g08600.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 3,123
- bp
- 4:25,079,869–25,141,510
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa04g08600
- eggNOG
- Preferred name: LOC104592507 | Seed ortholog: 56857.A0A200Q2E4 | COG: S | eggNOG OG: SPOC@131567|A-1*, SPOC@2759|AY-8, SPOC@3193|GJ-14
- Gene Ontology
- GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000785 chromatin; GO:0003674 molecular_function; GO:0003682 chromatin binding; GO:0003711 transcription elongation factor activity; GO:0003723 RNA binding; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005694 chromosome; GO:0007283 spermatogenesis; GO:0008270 zinc ion binding; GO:0009553 embryo sac development; GO:0009911 positive regulation of flower development; GO:0010228 vegetative to reproductive phase transition of meristem; GO:0030674 protein-macromolecule adaptor activity; GO:0031048 regulatory ncRNA-mediated heterochromatin formation; GO:0034244 negative regulation of transcription elongation by RNA polymerase II; GO:0140002 histone H3K4me3 reader activity; GO:0141006 transposable element silencing by piRNA-mediated heterochromatin formation; GO:0141196 transposable element silencing by piRNA-mediated DNA methylation
- KEGG
- EC: ec:6.1.1.6 | KO: K04567, K17596 | Pathway: 00970 | BRITE: 00001, 01000, 01007, 01009, 01613, 03016
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa04g08600.1-protein
derives_frommRNAPaHa04g08600.1
mRNAPaHa04g08600.1
part_ofgenePaHa04g08600
CDS
part_ofPaHa04g08600.1-CDS-4-1787993825:25079869..25081407mRNAPaHa04g08600.1
CDS
part_ofPaHa04g08600.1-CDS-4-1787993825:25081516..25081575mRNAPaHa04g08600.1
CDS
part_ofPaHa04g08600.1-CDS-4-1787993825:25122109..25122229mRNAPaHa04g08600.1
CDS
part_ofPaHa04g08600.1-CDS-4-1787993825:25140108..25141510mRNAPaHa04g08600.1
exon
part_ofPaHa04g08600.1-exon-4-1787993825:25079869..25081407mRNAPaHa04g08600.1
exon
part_ofPaHa04g08600.1-exon-4-1787993825:25081516..25081575mRNAPaHa04g08600.1
exon
part_ofPaHa04g08600.1-exon-4-1787993825:25122109..25122229mRNAPaHa04g08600.1
exon
part_ofPaHa04g08600.1-exon-4-1787993825:25140108..25141510mRNAPaHa04g08600.1
