Hass · mRNA

PaHa04g05520.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

585
bp
4:13,015,606–13,016,190
genomic location
Record overview

Feature identity

Identifier
PaHa04g05520.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
585 bp
Genomic location
4:13,015,606–13,016,190
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC107940782 | Seed ortholog: 337451.A0A443PK98 | COG: S | eggNOG OG: Transferase@131567|C-2!, Transferase@3398|Si-15
Gene Ontology
GO:0000325 plant-type vacuole; GO:0001558 regulation of cell growth; GO:0004467 long-chain fatty acid-CoA ligase activity; GO:0004860 protein kinase inhibitor activity; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005783 endoplasmic reticulum; GO:0005829 cytosol; GO:0006066 alcohol metabolic process; GO:0006355 regulation of DNA-templated transcription; GO:0009447 putrescine catabolic process; GO:0009535 chloroplast thylakoid membrane; GO:0009536 plastid; GO:0009555 pollen development; GO:0009567 double fertilization forming a zygote and endosperm; GO:0009723 response to ethylene; GO:0009733 response to auxin; GO:0009737 response to abscisic acid; GO:0009741 response to brassinosteroid; GO:0009809 lignin biosynthetic process; GO:0009821 alkaloid biosynthetic process; GO:0009836 fruit ripening, climacteric; GO:0009963 positive regulation of flavonoid biosynthetic process; GO:0010025 wax biosynthetic process; GO:0010087 phloem or xylem histogenesis; GO:0010327 acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase activity; GO:0010345 suberin biosynthetic process; GO:0010584 pollen exine formation; GO:0010597 green leaf volatile biosynthetic process; GO:0016020 membrane; GO:0016132 brassinosteroid biosynthetic process; GO:0016407 acetyltransferase activity; GO:0016746 acyltransferase activity; GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups; GO:0019631 quinate catabolic process; GO:0019633 shikimate catabolic process; GO:0042409 caffeoyl-CoA O-methyltransferase activity; GO:0042761 very long-chain fatty acid biosynthetic process; GO:0047172 shikimate O-hydroxycinnamoyltransferase activity; GO:0047205 quinate O-hydroxycinnamoyltransferase activity; GO:0050734 hydroxycinnamoyltransferase activity; GO:0052325 cell wall pectin biosynthetic process; GO:0080072 spermidine:sinapoyl CoA N-acyltransferase activity; GO:0080073 spermidine:coumaroyl CoA N-acyltransferase activity; GO:0080074 spermidine:caffeoyl CoA N-acyltransferase activity; GO:0080075 spermidine:feruloyl CoA N-acyltransferase activity; GO:0080088 spermidine hydroxycinnamate conjugate biosynthetic process; GO:0080089 sinapoyl spermidine:sinapoyl CoA N-acyltransferase activity; GO:0090430 caffeoyl-CoA: alcohol caffeoyl transferase activity; GO:0090431 alkyl caffeate ester biosynthetic process
KEGG
EC: ec:2.3.1.133 | KO: K13065 | Pathway: 00940, 00941, 00945, 01100, 01110 | Module: M00039 | BRITE: 00001, 01000
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa04g05520.1-CDS-4-1787993825:13015606..13016190
part_of
exonPaHa04g05520.1-exon-4-1787993825:13015606..13016190
part_of