Feature identity
- Identifier
- PaHa04g04240.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 969 bp
- Genomic location
- 4:10,213,870–10,218,343
- Strand
- −
Hass · mRNA
PaHa04g04240.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 969
- bp
- 4:10,213,870–10,218,343
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa04g04240
- eggNOG
- Preferred name: LOC104224544 | Seed ortholog: 337451.A0A3S3P1S8 | COG: S | eggNOG OG: AP2@131567|Eo-12, AP2@3193|Bfh-26, AP2@33090|Xs-18, AP2@3398|ExS-31!
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009414 response to water deprivation; GO:0009651 response to salt stress; GO:0009737 response to abscisic acid; GO:0010187 negative regulation of seed germination; GO:0040008 regulation of growth; GO:0043565 sequence-specific DNA binding; GO:0045723 positive regulation of fatty acid biosynthetic process; GO:1901959 positive regulation of cutin biosynthetic process; GO:1904278 positive regulation of wax biosynthetic process
- KEGG
- KO: K09285 | BRITE: 00001, 03000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa04g04240.1-protein
derives_frommRNAPaHa04g04240.1
mRNAPaHa04g04240.1
part_ofgenePaHa04g04240
CDS
part_ofPaHa04g04240.1-CDS-4-1787993825:10213870..10214333mRNAPaHa04g04240.1
CDS
part_ofPaHa04g04240.1-CDS-4-1787993825:10216288..10216364mRNAPaHa04g04240.1
CDS
part_ofPaHa04g04240.1-CDS-4-1787993825:10216720..10216770mRNAPaHa04g04240.1
CDS
part_ofPaHa04g04240.1-CDS-4-1787993825:10216870..10216943mRNAPaHa04g04240.1
CDS
part_ofPaHa04g04240.1-CDS-4-1787993825:10217090..10217178mRNAPaHa04g04240.1
CDS
part_ofPaHa04g04240.1-CDS-4-1787993825:10217542..10217624mRNAPaHa04g04240.1
CDS
part_ofPaHa04g04240.1-CDS-4-1787993825:10218213..10218343mRNAPaHa04g04240.1
exon
part_ofPaHa04g04240.1-exon-4-1787993825:10213870..10214333mRNAPaHa04g04240.1
exon
part_ofPaHa04g04240.1-exon-4-1787993825:10216288..10216364mRNAPaHa04g04240.1
exon
part_ofPaHa04g04240.1-exon-4-1787993825:10216720..10216770mRNAPaHa04g04240.1
exon
part_ofPaHa04g04240.1-exon-4-1787993825:10216870..10216943mRNAPaHa04g04240.1
exon
part_ofPaHa04g04240.1-exon-4-1787993825:10217090..10217178mRNAPaHa04g04240.1
exon
part_ofPaHa04g04240.1-exon-4-1787993825:10217542..10217624mRNAPaHa04g04240.1
exon
part_ofPaHa04g04240.1-exon-4-1787993825:10218213..10218343mRNAPaHa04g04240.1
