Hass · mRNA

PaHa04g00750.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

3,090
bp
4:2,892,268–2,908,803
genomic location
Record overview

Feature identity

Identifier
PaHa04g00750.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
3,090 bp
Genomic location
4:2,892,268–2,908,803
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC104589274 | Seed ortholog: 337451.A0A3S3MBP9 | COG: S | eggNOG OG: KOW@131567|BQ-9, Spt5-NGN@131567|A-1, Spt5_N@2759|A-1
Gene Ontology
GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000245 spliceosomal complex assembly; GO:0000993 RNA polymerase II complex binding; GO:0001042 RNA polymerase I core binding; GO:0001179 RNA polymerase I general transcription initiation factor binding; GO:0001764 neuron migration; GO:0003677 DNA binding; GO:0003682 chromatin binding; GO:0003711 transcription elongation factor activity; GO:0003723 RNA binding; GO:0003727 single-stranded RNA binding; GO:0003729 mRNA binding; GO:0003735 structural constituent of ribosome; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006338 chromatin remodeling; GO:0006351 DNA-templated transcription; GO:0006355 regulation of DNA-templated transcription; GO:0006357 regulation of transcription by RNA polymerase II; GO:0006368 transcription elongation by RNA polymerase II; GO:0008298 intracellular mRNA localization; GO:0009047 dosage compensation by hyperactivation of X chromosome; GO:0009267 cellular response to starvation; GO:0010508 positive regulation of autophagy; GO:0016239 positive regulation of macroautophagy; GO:0017070 U6 snRNA binding; GO:0019843 rRNA binding; GO:0019899 enzyme binding; GO:0021954 central nervous system neuron development; GO:0030097 hemopoiesis; GO:0030422 siRNA processing; GO:0030447 filamentous growth; GO:0030619 U1 snRNA binding; GO:0030620 U2 snRNA binding; GO:0030621 U4 snRNA binding; GO:0030623 U5 snRNA binding; GO:0031507 heterochromatin formation; GO:0032785 negative regulation of DNA-templated transcription, elongation; GO:0032786 positive regulation of DNA-templated transcription, elongation; GO:0032968 positive regulation of transcription elongation by RNA polymerase II; GO:0034244 negative regulation of transcription elongation by RNA polymerase II; GO:0036170 filamentous growth of a population of unicellular organisms in response to starvation; GO:0036180 filamentous growth of a population of unicellular organisms in response to biotic stimulus; GO:0040037 negative regulation of fibroblast growth factor receptor signaling pathway; GO:0042393 histone binding; GO:0044180 filamentous growth of a unicellular organism; GO:0044877 protein-containing complex binding; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0046427 positive regulation of receptor signaling pathway via JAK-STAT; GO:0046982 protein heterodimerization activity; GO:0060335 positive regulation of type II interferon-mediated signaling pathway; GO:0070990 snRNP binding; GO:0080188 gene silencing by siRNA-directed DNA methylation; GO:0090262 regulation of transcription-coupled nucleotide-excision repair; GO:0140463 chromatin-protein adaptor activity; GO:0140870 RNA polymerase inhibitor activity; GO:0160239 transcription pausing by RNA polymerase II; GO:1901534 positive regulation of hematopoietic progenitor cell differentiation; GO:1902038 positive regulation of hematopoietic stem cell differentiation; GO:2000232 regulation of rRNA processing; GO:2001208 negative regulation of transcription elongation by RNA polymerase I; GO:2001209 positive regulation of transcription elongation by RNA polymerase I
KEGG
KO: K15172 | Pathway: 03250 | BRITE: 00001, 03019, 03021
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa04g00750.1-CDS-4-1787993825:2892268..2892574
part_of
CDSPaHa04g00750.1-CDS-4-1787993825:2899477..2899712
part_of
CDSPaHa04g00750.1-CDS-4-1787993825:2899806..2899952
part_of
CDSPaHa04g00750.1-CDS-4-1787993825:2900033..2900191
part_of
CDSPaHa04g00750.1-CDS-4-1787993825:2900338..2900421
part_of
CDSPaHa04g00750.1-CDS-4-1787993825:2901467..2901537
part_of
CDSPaHa04g00750.1-CDS-4-1787993825:2901642..2901999
part_of
CDSPaHa04g00750.1-CDS-4-1787993825:2902092..2902247
part_of
CDSPaHa04g00750.1-CDS-4-1787993825:2902351..2902448
part_of
CDSPaHa04g00750.1-CDS-4-1787993825:2902573..2902621
part_of
CDSPaHa04g00750.1-CDS-4-1787993825:2902701..2902853
part_of
CDSPaHa04g00750.1-CDS-4-1787993825:2902936..2903079
part_of
CDSPaHa04g00750.1-CDS-4-1787993825:2903209..2903299
part_of
CDSPaHa04g00750.1-CDS-4-1787993825:2903444..2903602
part_of
CDSPaHa04g00750.1-CDS-4-1787993825:2903689..2903737
part_of
CDSPaHa04g00750.1-CDS-4-1787993825:2903828..2903922
part_of
CDSPaHa04g00750.1-CDS-4-1787993825:2904279..2904357
part_of
CDSPaHa04g00750.1-CDS-4-1787993825:2906996..2907050
part_of
CDSPaHa04g00750.1-CDS-4-1787993825:2907168..2907282
part_of
CDSPaHa04g00750.1-CDS-4-1787993825:2907378..2907521
part_of
CDSPaHa04g00750.1-CDS-4-1787993825:2908358..2908455
part_of
CDSPaHa04g00750.1-CDS-4-1787993825:2908561..2908803
part_of
exonPaHa04g00750.1-exon-4-1787993825:2892268..2892574
part_of
exonPaHa04g00750.1-exon-4-1787993825:2899477..2899712
part_of
exonPaHa04g00750.1-exon-4-1787993825:2899806..2899952
part_of
exonPaHa04g00750.1-exon-4-1787993825:2900033..2900191
part_of
exonPaHa04g00750.1-exon-4-1787993825:2900338..2900421
part_of
exonPaHa04g00750.1-exon-4-1787993825:2901467..2901537
part_of
exonPaHa04g00750.1-exon-4-1787993825:2901642..2901999
part_of
exonPaHa04g00750.1-exon-4-1787993825:2902092..2902247
part_of
exonPaHa04g00750.1-exon-4-1787993825:2902351..2902448
part_of
exonPaHa04g00750.1-exon-4-1787993825:2902573..2902621
part_of
exonPaHa04g00750.1-exon-4-1787993825:2902701..2902853
part_of
exonPaHa04g00750.1-exon-4-1787993825:2902936..2903079
part_of
exonPaHa04g00750.1-exon-4-1787993825:2903209..2903299
part_of
exonPaHa04g00750.1-exon-4-1787993825:2903444..2903602
part_of
exonPaHa04g00750.1-exon-4-1787993825:2903689..2903737
part_of
exonPaHa04g00750.1-exon-4-1787993825:2903828..2903922
part_of
exonPaHa04g00750.1-exon-4-1787993825:2904279..2904357
part_of
exonPaHa04g00750.1-exon-4-1787993825:2906996..2907050
part_of
exonPaHa04g00750.1-exon-4-1787993825:2907168..2907282
part_of
exonPaHa04g00750.1-exon-4-1787993825:2907378..2907521
part_of
exonPaHa04g00750.1-exon-4-1787993825:2908358..2908455
part_of
exonPaHa04g00750.1-exon-4-1787993825:2908561..2908803
part_of