Feature identity
- Identifier
- PaHa01g12110.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 2,139 bp
- Genomic location
- 1:18,069,591–18,100,626
- Strand
- −
Hass · mRNA
PaHa01g12110.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 2,139
- bp
- 1:18,069,591–18,100,626
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa01g12110
- eggNOG
- Preferred name: SIGF | Seed ortholog: 337451.A0A443NLF5 | COG: S | eggNOG OG: Sigma70_r2@131567|AQM-18!, Sigma70_r2@3398|LAZ-28, Sigma70_r3@131567|C-2!, Sigma70_r3@3193|c-5, Sigma70_r4@131567|Bnn-30, Sigma70_r4@58023|GWX-43
- Gene Ontology
- GO:0005515 protein binding; GO:0006352 DNA-templated transcription initiation; GO:0009507 chloroplast; GO:0009536 plastid; GO:0016987 sigma factor activity; GO:0045893 positive regulation of DNA-templated transcription; GO:0071482 cellular response to light stimulus; GO:0071483 cellular response to blue light; GO:0090351 seedling development
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa01g12110.1-protein
derives_frommRNAPaHa01g12110.1
mRNAPaHa01g12110.1
part_ofgenePaHa01g12110
CDS
part_ofPaHa01g12110.1-CDS-1-1787993825:18069591..18069881mRNAPaHa01g12110.1
CDS
part_ofPaHa01g12110.1-CDS-1-1787993825:18071314..18071511mRNAPaHa01g12110.1
CDS
part_ofPaHa01g12110.1-CDS-1-1787993825:18075505..18075645mRNAPaHa01g12110.1
CDS
part_ofPaHa01g12110.1-CDS-1-1787993825:18083392..18083622mRNAPaHa01g12110.1
CDS
part_ofPaHa01g12110.1-CDS-1-1787993825:18083738..18084017mRNAPaHa01g12110.1
CDS
part_ofPaHa01g12110.1-CDS-1-1787993825:18086288..18086530mRNAPaHa01g12110.1
CDS
part_ofPaHa01g12110.1-CDS-1-1787993825:18086855..18086982mRNAPaHa01g12110.1
CDS
part_ofPaHa01g12110.1-CDS-1-1787993825:18094624..18094763mRNAPaHa01g12110.1
CDS
part_ofPaHa01g12110.1-CDS-1-1787993825:18096279..18096430mRNAPaHa01g12110.1
CDS
part_ofPaHa01g12110.1-CDS-1-1787993825:18100212..18100519mRNAPaHa01g12110.1
CDS
part_ofPaHa01g12110.1-CDS-1-1787993825:18100600..18100626mRNAPaHa01g12110.1
exon
part_ofPaHa01g12110.1-exon-1-1787993825:18069591..18069881mRNAPaHa01g12110.1
exon
part_ofPaHa01g12110.1-exon-1-1787993825:18071314..18071511mRNAPaHa01g12110.1
exon
part_ofPaHa01g12110.1-exon-1-1787993825:18075505..18075645mRNAPaHa01g12110.1
exon
part_ofPaHa01g12110.1-exon-1-1787993825:18083392..18083622mRNAPaHa01g12110.1
exon
part_ofPaHa01g12110.1-exon-1-1787993825:18083738..18084017mRNAPaHa01g12110.1
exon
part_ofPaHa01g12110.1-exon-1-1787993825:18086288..18086530mRNAPaHa01g12110.1
exon
part_ofPaHa01g12110.1-exon-1-1787993825:18086855..18086982mRNAPaHa01g12110.1
exon
part_ofPaHa01g12110.1-exon-1-1787993825:18094624..18094763mRNAPaHa01g12110.1
exon
part_ofPaHa01g12110.1-exon-1-1787993825:18096279..18096430mRNAPaHa01g12110.1
exon
part_ofPaHa01g12110.1-exon-1-1787993825:18100212..18100519mRNAPaHa01g12110.1
exon
part_ofPaHa01g12110.1-exon-1-1787993825:18100600..18100626mRNAPaHa01g12110.1
