Hass · mRNA

PaHa01g11880.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

4,338
bp
1:17,222,504–17,309,161
genomic location
Record overview

Feature identity

Identifier
PaHa01g11880.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
4,338 bp
Genomic location
1:17,222,504–17,309,161
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: PKL | Seed ortholog: 337451.A0A3S5WGG7 | COG: S | eggNOG OG: CHDII_SANT-like@2759|A-1, Chromo@131567|Kq-11, Chromo@2759|BJe-24, DUF1087@131567|A-1*, DUF1087@2759|C-2, Helicase_C|855I79@131567, Helicase_C|855I79@2759, PHD@131567|A-1*, PHD@2759|Dei-24, SNF2-rel_dom@131567|Cd-9, SNF2-rel_dom@2759|ANz-20
Gene Ontology
GO:0000976 transcription cis-regulatory region binding; GO:0001221 transcription coregulator binding; GO:0003674 molecular_function; GO:0003677 DNA binding; GO:0003678 DNA helicase activity; GO:0003682 chromatin binding; GO:0003714 transcription corepressor activity; GO:0003723 RNA binding; GO:0004386 helicase activity; GO:0004402 histone acetyltransferase activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006338 chromatin remodeling; GO:0008270 zinc ion binding; GO:0009414 response to water deprivation; GO:0009733 response to auxin; GO:0009736 cytokinin-activated signaling pathway; GO:0009739 response to gibberellin; GO:0009788 negative regulation of abscisic acid-activated signaling pathway; GO:0009992 intracellular water homeostasis; GO:0010385 double-stranded methylated DNA binding; GO:0016887 ATP hydrolysis activity; GO:0031491 nucleosome binding; GO:0031492 nucleosomal DNA binding; GO:0042393 histone binding; GO:0042826 histone deacetylase binding; GO:0043993 histone H3K18 acetyltransferase activity; GO:0045892 negative regulation of DNA-templated transcription; GO:0048364 root development; GO:0051301 cell division; GO:0060090 molecular adaptor activity; GO:0061628 histone H3K27me3 reader activity; GO:0061629 RNA polymerase II-specific DNA-binding transcription factor binding; GO:0140297 DNA-binding transcription factor binding; GO:0140658 ATP-dependent chromatin remodeler activity; GO:0140750 nucleosome array spacer activity; GO:2000023 regulation of lateral root development
KEGG
EC: ec:2.1.1.354, ec:3.1.3.16, ec:5.6.2.6 | KO: K11643 | Pathway: 03082 | BRITE: 00001, 03036
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa01g11880.1-CDS-1-1787993825:17222504..17222628
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CDSPaHa01g11880.1-CDS-1-1787993825:17222729..17222990
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CDSPaHa01g11880.1-CDS-1-1787993825:17223073..17223146
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CDSPaHa01g11880.1-CDS-1-1787993825:17223581..17223710
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CDSPaHa01g11880.1-CDS-1-1787993825:17227763..17228150
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CDSPaHa01g11880.1-CDS-1-1787993825:17228714..17228844
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CDSPaHa01g11880.1-CDS-1-1787993825:17242512..17242588
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CDSPaHa01g11880.1-CDS-1-1787993825:17242744..17242805
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CDSPaHa01g11880.1-CDS-1-1787993825:17246208..17246282
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CDSPaHa01g11880.1-CDS-1-1787993825:17246469..17246562
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CDSPaHa01g11880.1-CDS-1-1787993825:17246670..17246820
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CDSPaHa01g11880.1-CDS-1-1787993825:17247188..17247391
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CDSPaHa01g11880.1-CDS-1-1787993825:17257645..17257726
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CDSPaHa01g11880.1-CDS-1-1787993825:17257867..17257976
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CDSPaHa01g11880.1-CDS-1-1787993825:17266420..17266542
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CDSPaHa01g11880.1-CDS-1-1787993825:17266646..17266712
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CDSPaHa01g11880.1-CDS-1-1787993825:17266827..17266996
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CDSPaHa01g11880.1-CDS-1-1787993825:17274920..17275058
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CDSPaHa01g11880.1-CDS-1-1787993825:17277800..17277903
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CDSPaHa01g11880.1-CDS-1-1787993825:17277993..17278135
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CDSPaHa01g11880.1-CDS-1-1787993825:17279525..17279624
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CDSPaHa01g11880.1-CDS-1-1787993825:17279755..17279805
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CDSPaHa01g11880.1-CDS-1-1787993825:17280634..17280741
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CDSPaHa01g11880.1-CDS-1-1787993825:17280818..17281030
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CDSPaHa01g11880.1-CDS-1-1787993825:17281111..17281247
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CDSPaHa01g11880.1-CDS-1-1787993825:17281348..17281443
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CDSPaHa01g11880.1-CDS-1-1787993825:17281596..17281840
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CDSPaHa01g11880.1-CDS-1-1787993825:17283840..17284001
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CDSPaHa01g11880.1-CDS-1-1787993825:17287336..17287490
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CDSPaHa01g11880.1-CDS-1-1787993825:17287589..17287726
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CDSPaHa01g11880.1-CDS-1-1787993825:17296330..17296479
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CDSPaHa01g11880.1-CDS-1-1787993825:17305497..17305562
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CDSPaHa01g11880.1-CDS-1-1787993825:17309156..17309161
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exonPaHa01g11880.1-exon-1-1787993825:17222504..17222628
part_of
exonPaHa01g11880.1-exon-1-1787993825:17222729..17222990
part_of
exonPaHa01g11880.1-exon-1-1787993825:17223073..17223146
part_of
exonPaHa01g11880.1-exon-1-1787993825:17223581..17223710
part_of
exonPaHa01g11880.1-exon-1-1787993825:17227763..17228150
part_of
exonPaHa01g11880.1-exon-1-1787993825:17228714..17228844
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exonPaHa01g11880.1-exon-1-1787993825:17242512..17242588
part_of
exonPaHa01g11880.1-exon-1-1787993825:17242744..17242805
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exonPaHa01g11880.1-exon-1-1787993825:17246208..17246282
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exonPaHa01g11880.1-exon-1-1787993825:17246469..17246562
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exonPaHa01g11880.1-exon-1-1787993825:17246670..17246820
part_of
exonPaHa01g11880.1-exon-1-1787993825:17247188..17247391
part_of
exonPaHa01g11880.1-exon-1-1787993825:17257645..17257726
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exonPaHa01g11880.1-exon-1-1787993825:17257867..17257976
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exonPaHa01g11880.1-exon-1-1787993825:17266420..17266542
part_of
exonPaHa01g11880.1-exon-1-1787993825:17266646..17266712
part_of
exonPaHa01g11880.1-exon-1-1787993825:17266827..17266996
part_of
exonPaHa01g11880.1-exon-1-1787993825:17274920..17275058
part_of
exonPaHa01g11880.1-exon-1-1787993825:17277800..17277903
part_of
exonPaHa01g11880.1-exon-1-1787993825:17277993..17278135
part_of
exonPaHa01g11880.1-exon-1-1787993825:17279525..17279624
part_of
exonPaHa01g11880.1-exon-1-1787993825:17279755..17279805
part_of
exonPaHa01g11880.1-exon-1-1787993825:17280634..17280741
part_of
exonPaHa01g11880.1-exon-1-1787993825:17280818..17281030
part_of
exonPaHa01g11880.1-exon-1-1787993825:17281111..17281247
part_of
exonPaHa01g11880.1-exon-1-1787993825:17281348..17281443
part_of
exonPaHa01g11880.1-exon-1-1787993825:17281596..17281840
part_of
exonPaHa01g11880.1-exon-1-1787993825:17283840..17284001
part_of
exonPaHa01g11880.1-exon-1-1787993825:17287336..17287490
part_of
exonPaHa01g11880.1-exon-1-1787993825:17287589..17287726
part_of
exonPaHa01g11880.1-exon-1-1787993825:17296330..17296479
part_of
exonPaHa01g11880.1-exon-1-1787993825:17305497..17305562
part_of
exonPaHa01g11880.1-exon-1-1787993825:17309156..17309161
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