Hass · gene

PaHa_c99g00040

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

360
bp
unplaced_contig_99:3,346–3,782
genomic location
Record overview

Feature identity

Identifier
PaHa_c99g00040
Feature type
gene
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
360 bp
Genomic location
unplaced_contig_99:3,346–3,782
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: Cstf2 | Seed ortholog: 331657.A0A4U0X5I2 | COG: COG0724 | eggNOG OG: RRM_1@131567|HCP-31
Gene Ontology
GO:0003723 RNA binding; GO:0003729 mRNA binding; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005829 cytosol; GO:0005847 mRNA cleavage and polyadenylation specificity factor complex; GO:0005848 mRNA cleavage stimulating factor complex; GO:0005849 mRNA cleavage factor complex; GO:0006396 RNA processing; GO:0006397 mRNA processing; GO:0008150 biological_process; GO:0010608 post-transcriptional regulation of gene expression; GO:0016441 post-transcriptional gene silencing; GO:0030846 termination of RNA polymerase II transcription, poly(A)-coupled; GO:0031047 regulatory ncRNA-mediated gene silencing; GO:0031123 RNA 3'-end processing; GO:0031124 mRNA 3'-end processing; GO:0033620 Mei2 nuclear dot complex; GO:0033621 nuclear mRNA surveillance of meiosis-specific transcripts; GO:0042868 antisense RNA metabolic process; GO:0045892 negative regulation of DNA-templated transcription; GO:0048589 developmental growth; GO:0060090 molecular adaptor activity; GO:0180010 co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway
KEGG
KO: K14407 | Pathway: 03015 | BRITE: 00001, 03019
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.