Hass · gene

PaHa_c381g00170

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

2,517
bp
unplaced_contig_381:9,964–12,562
genomic location
Record overview

Feature identity

Identifier
PaHa_c381g00170
Feature type
gene
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
2,517 bp
Genomic location
unplaced_contig_381:9,964–12,562
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: OAF3 | Seed ortholog: 1149755.A0A2J6QRC3 | COG: S | eggNOG OG: Zn_clus@131567|A-1*, Zn_clus@2759|BDV-22
Gene Ontology
GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000775 chromosome, centromeric region; GO:0000776 kinetochore; GO:0000921 septin ring assembly; GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0001216 DNA-binding transcription activator activity; GO:0001217 DNA-binding transcription repressor activity; GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005667 transcription regulator complex; GO:0005737 cytoplasm; GO:0005739 mitochondrion; GO:0006351 DNA-templated transcription; GO:0006355 regulation of DNA-templated transcription; GO:0006357 regulation of transcription by RNA polymerase II; GO:0006631 fatty acid metabolic process; GO:0007031 peroxisome organization; GO:0007094 mitotic spindle assembly checkpoint signaling; GO:0008150 biological_process; GO:0008270 zinc ion binding; GO:0008301 DNA binding, bending; GO:0009410 response to xenobiotic stimulus; GO:0010811 positive regulation of cell-substrate adhesion; GO:0019237 centromeric DNA binding; GO:0019323 pentose catabolic process; GO:0030447 filamentous growth; GO:0031518 CBF3 complex; GO:0032000 positive regulation of fatty acid beta-oxidation; GO:0033554 cellular response to stress; GO:0034599 cellular response to oxidative stress; GO:0034605 cellular response to heat; GO:0036180 filamentous growth of a population of unicellular organisms in response to biotic stimulus; GO:0042802 identical protein binding; GO:0043565 sequence-specific DNA binding; GO:0044011 single-species biofilm formation on inanimate substrate; GO:0045893 positive regulation of DNA-templated transcription; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0051382 kinetochore assembly; GO:0051595 response to methylglyoxal; GO:0051701 biological process involved in interaction with host; GO:0070783 growth of unicellular organism as a thread of attached cells; GO:0070784 regulation of growth of unicellular organism as a thread of attached cells; GO:0070785 negative regulation of growth of unicellular organism as a thread of attached cells; GO:0070786 positive regulation of growth of unicellular organism as a thread of attached cells; GO:0071400 cellular response to oleic acid; GO:0071456 cellular response to hypoxia; GO:0071466 cellular response to xenobiotic stimulus; GO:0071500 cellular response to nitrosative stress; GO:0072686 mitotic spindle; GO:0089716 Pip2-Oaf1 complex; GO:1900189 positive regulation of cell adhesion involved in single-species biofilm formation; GO:1900443 regulation of filamentous growth of a population of unicellular organisms in response to biotic stimulus; GO:1900445 positive regulation of filamentous growth of a population of unicellular organisms in response to biotic stimulus; GO:2001040 positive regulation of cellular response to drug
KEGG
KO: K09247, K11575, K17906 | Pathway: 04136, 04138 | BRITE: 00001, 03000, 03029, 03036, 04131
Biological context

Connected feature records

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