Hass · gene

PaHa_c257g00030

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

984
bp
unplaced_contig_257:34,809–35,792
genomic location
Record overview

Feature identity

Identifier
PaHa_c257g00030
Feature type
gene
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
984 bp
Genomic location
unplaced_contig_257:34,809–35,792
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC108999108 | Seed ortholog: 337451.A0A3S3R1B8 | COG: S | eggNOG OG: PG_binding_1@131221|FqU-29, PG_binding_1@131567|e-5, PG_binding_1@1437183|GaX-30, PG_binding_1@2759|ABO-15, Peptidase_M10@131567|AY-8, Peptidase_M10@1437183|AQW-28, Peptidase_M10@58023|tP-24
Gene Ontology
GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000139 Golgi membrane; GO:0001046 core promoter sequence-specific DNA binding; GO:0001501 skeletal system development; GO:0001503 ossification; GO:0001525 angiogenesis; GO:0001541 ovarian follicle development; GO:0001542 ovulation from ovarian follicle; GO:0001553 luteinization; GO:0001554 luteolysis; GO:0001649 osteoblast differentiation; GO:0001666 response to hypoxia; GO:0001755 neural crest cell migration; GO:0001822 kidney development; GO:0001933 negative regulation of protein phosphorylation; GO:0001934 positive regulation of protein phosphorylation; GO:0001935 endothelial cell proliferation; GO:0001945 lymph vessel development; GO:0001955 blood vessel maturation; GO:0001957 intramembranous ossification; GO:0001958 endochondral ossification; GO:0001968 fibronectin binding; GO:0002168 instar larval development; GO:0002218 activation of innate immune response; GO:0002633 positive regulation of granuloma formation; GO:0002687 positive regulation of leukocyte migration; GO:0002779 antibacterial peptide secretion; GO:0002780 antibacterial peptide biosynthetic process; GO:0003144 embryonic heart tube formation; GO:0003319 cardioblast migration to the midline involved in heart rudiment formation; GO:0003407 neural retina development; GO:0003417 growth plate cartilage development; GO:0004175 endopeptidase activity; GO:0004222 metalloendopeptidase activity; GO:0004252 serine-type endopeptidase activity; GO:0005178 integrin binding; GO:0005509 calcium ion binding; GO:0005515 protein binding; GO:0005518 collagen binding; GO:0005576 extracellular region; GO:0005604 basement membrane; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005739 mitochondrion; GO:0005783 endoplasmic reticulum; GO:0005796 Golgi lumen; GO:0005829 cytosol; GO:0005886 plasma membrane; GO:0005925 focal adhesion; GO:0006508 proteolysis; GO:0006509 membrane protein ectodomain proteolysis; GO:0006606 protein import into nucleus; GO:0006929 substrate-dependent cell migration; GO:0006954 inflammatory response; GO:0006979 response to oxidative stress; GO:0007155 cell adhesion; GO:0007162 negative regulation of cell adhesion; GO:0007419 ventral cord development; GO:0007424 open tracheal system development; GO:0007426 tracheal outgrowth, open tracheal system; GO:0007505 adult fat body development; GO:0007507 heart development; GO:0007561 imaginal disc eversion; GO:0007565 female pregnancy; GO:0007566 embryo implantation; GO:0007567 parturition; GO:0007591 molting cycle, chitin-based cuticle; GO:0008045 motor neuron axon guidance; GO:0008047 enzyme activator activity; GO:0008201 heparin binding; GO:0008233 peptidase activity; GO:0008237 metallopeptidase activity; GO:0008270 zinc ion binding; GO:0008584 male gonad development; GO:0009410 response to xenobiotic stimulus; GO:0009611 response to wounding; GO:0009612 response to mechanical stimulus; GO:0009617 response to bacterium; GO:0009725 response to hormone; GO:0009897 external side of plasma membrane; GO:0009948 anterior/posterior axis specification; GO:0009986 cell surface; GO:0010001 glial cell differentiation; GO:0010628 positive regulation of gene expression; GO:0010760 negative regulation of macrophage chemotaxis; GO:0010763 positive regulation of fibroblast migration; GO:0010831 positive regulation of myotube differentiation; GO:0010842 retina layer formation; GO:0010954 positive regulation of protein processing; GO:0014012 peripheral nervous system axon regeneration; GO:0014823 response to activity; GO:0014911 positive regulation of smooth muscle cell migration; GO:0016020 membrane; GO:0016323 basolateral plasma membrane; GO:0016477 cell migration; GO:0016485 protein processing; GO:0016504 peptidase activator activity; GO:0021782 glial cell development; GO:0022617 extracellular matrix disassembly; GO:0030010 establishment of cell polarity; GO:0030017 sarcomere; GO:0030163 protein catabolic process; GO:0030198 extracellular matrix organization; GO:0030199 collagen fibril organization; GO:0030225 macrophage differentiation; GO:0030282 bone mineralization; GO:0030307 positive regulation of cell growth; GO:0030324 lung development; GO:0030334 regulation of cell migration; GO:0030335 positive regulation of cell migration; GO:0030425 dendrite; GO:0030511 positive regulation of transforming growth factor beta receptor signaling pathway; GO:0030574 collagen catabolic process; GO:0030728 ovulation; GO:0031012 extracellular matrix; GO:0031101 fin regeneration; GO:0031290 retinal ganglion cell axon guidance; GO:0031293 membrane protein intracellular domain proteolysis; GO:0031334 positive regulation of protein-containing complex assembly; GO:0031410 cytoplasmic vesicle; GO:0031638 zymogen activation; GO:0031667 response to nutrient levels; GO:0031915 positive regulation of synaptic plasticity; GO:0032355 response to estradiol; GO:0032526 response to retinoic acid; GO:0032588 trans-Golgi network membrane; GO:0032727 positive regulation of interferon-alpha production; GO:0032760 positive regulation of tumor necrosis factor production; GO:0032991 protein-containing complex; GO:0033334 fin morphogenesis; GO:0034097 response to cytokine; GO:0034614 cellular response to reactive oxygen species; GO:0034769 basement membrane disassembly; GO:0035001 dorsal trunk growth, open tracheal system; GO:0035094 response to nicotine; GO:0035116 embryonic hindlimb morphogenesis; GO:0035159 regulation of tube length, open tracheal system; GO:0035202 tracheal pit formation in open tracheal system; GO:0035313 wound healing, spreading of epidermal cells; GO:0035579 specific granule membrane; GO:0035580 specific granule lumen; GO:0035701 hematopoietic stem cell migration; GO:0035987 endodermal cell differentiation; GO:0035988 chondrocyte proliferation; GO:0036211 protein modification process; GO:0040037 negative regulation of fibroblast growth factor receptor signaling pathway; GO:0042060 wound healing; GO:0042074 cell migration involved in gastrulation; GO:0042127 regulation of cell population proliferation; GO:0042246 tissue regeneration; GO:0042470 melanosome; GO:0042542 response to hydrogen peroxide; GO:0042742 defense response to bacterium; GO:0042756 drinking behavior; GO:0042802 identical protein binding; GO:0043065 positive regulation of apoptotic process; GO:0043066 negative regulation of apoptotic process; GO:0043120 tumor necrosis factor binding; GO:0043388 positive regulation of DNA binding; GO:0043408 regulation of MAPK cascade; GO:0043565 sequence-specific DNA binding; GO:0043615 astrocyte cell migration; GO:0043627 response to estrogen; GO:0044297 cell body; GO:0044331 cell-cell adhesion mediated by cadherin; GO:0044354 macropinosome; GO:0044849 estrous cycle; GO:0044877 protein-containing complex binding; GO:0045089 positive regulation of innate immune response; GO:0045111 intermediate filament cytoskeleton; GO:0045216 cell-cell junction organization; GO:0045296 cadherin binding; GO:0045579 positive regulation of B cell differentiation; GO:0045742 positive regulation of epidermal growth factor receptor signaling pathway; GO:0045746 negative regulation of Notch signaling pathway; GO:0045766 positive regulation of angiogenesis; GO:0045906 negative regulation of vasoconstriction; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0046331 lateral inhibition; GO:0046529 imaginal disc fusion, thorax closure; GO:0046581 intercellular canaliculus; GO:0048013 ephrin receptor signaling pathway; GO:0048147 negative regulation of fibroblast proliferation; GO:0048246 macrophage chemotaxis; GO:0048286 lung alveolus development; GO:0048306 calcium-dependent protein binding; GO:0048661 positive regulation of smooth muscle cell proliferation; GO:0048701 embryonic cranial skeleton morphogenesis; GO:0048705 skeletal system morphogenesis; GO:0048754 branching morphogenesis of an epithelial tube; GO:0048771 tissue remodeling; GO:0048870 cell motility; GO:0050679 positive regulation of epithelial cell proliferation; GO:0050691 regulation of defense response to virus by host; GO:0050750 low-density lipoprotein particle receptor binding; GO:0050829 defense response to Gram-negative bacterium; GO:0050830 defense response to Gram-positive bacterium; GO:0050965 detection of temperature stimulus involved in sensory perception of pain; GO:0051216 cartilage development; GO:0051549 positive regulation of keratinocyte migration; GO:0051591 response to cAMP; GO:0051602 response to electrical stimulus; GO:0051895 negative regulation of focal adhesion assembly; GO:0051898 negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction; GO:0055093 response to hyperoxia; GO:0060022 hard palate development; GO:0060026 convergent extension; GO:0060027 convergent extension involved in gastrulation; GO:0060041 retina development in camera-type eye; GO:0060054 positive regulation of epithelial cell proliferation involved in wound healing; GO:0060135 maternal process involved in female pregnancy; GO:0060253 negative regulation of glial cell proliferation; GO:0060309 elastin catabolic process; GO:0060322 head development; GO:0060325 face morphogenesis; GO:0060339 negative regulation of type I interferon-mediated signaling pathway; GO:0060340 positive regulation of type I interferon-mediated signaling pathway; GO:0060346 bone trabecula formation; GO:0060348 bone development; GO:0060349 bone morphogenesis; GO:0060429 epithelium development; GO:0060740 prostate gland epithelium morphogenesis; GO:0061037 negative regulation of cartilage development; GO:0061450 trophoblast cell migration; GO:0070006 metalloaminopeptidase activity; GO:0070062 extracellular exosome; GO:0070173 regulation of enamel mineralization; GO:0071222 cellular response to lipopolysaccharide; GO:0071230 cellular response to amino acid stimulus; GO:0071260 cellular response to mechanical stimulus; GO:0071345 cellular response to cytokine stimulus; GO:0071347 cellular response to interleukin-1; GO:0071392 cellular response to estradiol stimulus; GO:0071412 cellular response to genistein; GO:0071460 cellular response to cell-matrix adhesion; GO:0071492 cellular response to UV-A; GO:0071498 cellular response to fluid shear stress; GO:0071711 basement membrane organization; GO:0071732 cellular response to nitric oxide; GO:0090090 negative regulation of canonical Wnt signaling pathway; GO:0090200 positive regulation of release of cytochrome c from mitochondria; GO:0090594 inflammatory response to wounding; GO:0097094 craniofacial suture morphogenesis; GO:0097150 neuronal stem cell population maintenance; GO:0097156 fasciculation of motor neuron axon; GO:0097179 protease inhibitor complex; GO:0097186 amelogenesis; GO:0097374 sensory neuron axon guidance; GO:0098586 cellular response to virus; GO:0098609 cell-cell adhesion; GO:0098685 Schaffer collateral - CA1 synapse; GO:0098965 extracellular matrix of synaptic cleft; GO:0098978 glutamatergic synapse; GO:0099092 postsynaptic density, intracellular component; GO:0099564 modification of synaptic structure, modulating synaptic transmission; GO:0150054 regulation of postsynaptic neurotransmitter receptor diffusion trapping; GO:0150077 regulation of neuroinflammatory response; GO:0150078 positive regulation of neuroinflammatory response; GO:0160144 GDF15-GFRAL signaling pathway; GO:0160145 negative regulation of GDF15-GFRAL signaling pathway; GO:1901163 regulation of trophoblast cell migration; GO:1901202 negative regulation of extracellular matrix assembly; GO:1903076 regulation of protein localization to plasma membrane; GO:1903265 positive regulation of tumor necrosis factor-mediated signaling pathway; GO:1903378 positive regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway; GO:1903980 positive regulation of microglial cell activation; GO:1904063 negative regulation of cation transmembrane transport; GO:1904244 positive regulation of pancreatic trypsinogen secretion; GO:1904645 response to amyloid-beta; GO:1904707 positive regulation of vascular associated smooth muscle cell proliferation; GO:1904724 tertiary granule lumen; GO:1904813 ficolin-1-rich granule lumen; GO:1904905 negative regulation of endothelial cell-matrix adhesion; GO:1904932 negative regulation of cartilage condensation; GO:1905049 negative regulation of metallopeptidase activity; GO:1905523 positive regulation of macrophage migration; GO:1990314 cellular response to insulin-like growth factor stimulus; GO:1990834 response to odorant; GO:2000378 negative regulation of reactive oxygen species metabolic process; GO:2000647 negative regulation of stem cell proliferation; GO:2000697 negative regulation of epithelial cell differentiation involved in kidney development; GO:2001243 negative regulation of intrinsic apoptotic signaling pathway
KEGG
EC: ec:3.4.24.12, ec:3.4.24.17, ec:3.4.24.22, ec:3.4.24.23, ec:3.4.24.24, ec:3.4.24.34, ec:3.4.24.35, ec:3.4.24.65, ec:3.4.24.7, ec:3.4.24.80 | KO: K01388, K01394, K01396, K01397, K01398, K01402, K01403, K01413, K07763, K07994, K07995, K07996, K07997, K07998, K07999, K08002, K08003, K08005, K08006, K19957 | Pathway: 01522, 03320, 04310, 04657, 04668, 04670, 04912, 04915, 04926, 04928, 04933, 05161, 05166, 05171, 05200, 05202, 05205, 05206, 05215, 05219, 05323, 05415, 05417, 05418 | BRITE: 00001, 01000, 01002
Biological context

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