Feature identity
- Identifier
- PaHa01g11570.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 2,160 bp
- Genomic location
- 1:16,900,924–16,911,140
- Strand
- +
Hass · mRNA
PaHa01g11570.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 2,160
- bp
- 1:16,900,924–16,911,140
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa01g11570
- eggNOG
- Preferred name: SE | Seed ortholog: 337451.A0A3S3NGS0 | COG: S | eggNOG OG: ARS2@2759|A-1, ARS2@3398|BB-10, SERRATE_Ars2_N@2759|A-1, SERRATE_Ars2_N@3398|Af-8
- Gene Ontology
- GO:0000381 regulation of alternative mRNA splicing, via spliceosome; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005730 nucleolus; GO:0005846 nuclear cap binding complex; GO:0006355 regulation of DNA-templated transcription; GO:0008380 RNA splicing; GO:0010267 ta-siRNA processing; GO:0010445 nuclear dicing body; GO:0016607 nuclear speck; GO:0031053 primary miRNA processing; GO:0048367 shoot system development; GO:0048509 regulation of meristem development; GO:2000011 regulation of adaxial/abaxial pattern formation
- KEGG
- KO: K27103 | BRITE: 00001, 03019
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa01g11570.1-protein
derives_frommRNAPaHa01g11570.1
mRNAPaHa01g11570.1
part_ofgenePaHa01g11570
CDS
part_ofPaHa01g11570.1-CDS-1-1787993825:16900924..16901288mRNAPaHa01g11570.1
CDS
part_ofPaHa01g11570.1-CDS-1-1787993825:16903576..16903679mRNAPaHa01g11570.1
CDS
part_ofPaHa01g11570.1-CDS-1-1787993825:16905167..16905227mRNAPaHa01g11570.1
CDS
part_ofPaHa01g11570.1-CDS-1-1787993825:16905782..16905856mRNAPaHa01g11570.1
CDS
part_ofPaHa01g11570.1-CDS-1-1787993825:16905999..16906073mRNAPaHa01g11570.1
CDS
part_ofPaHa01g11570.1-CDS-1-1787993825:16906165..16906212mRNAPaHa01g11570.1
CDS
part_ofPaHa01g11570.1-CDS-1-1787993825:16906449..16906517mRNAPaHa01g11570.1
CDS
part_ofPaHa01g11570.1-CDS-1-1787993825:16907338..16908111mRNAPaHa01g11570.1
CDS
part_ofPaHa01g11570.1-CDS-1-1787993825:16908209..16908257mRNAPaHa01g11570.1
CDS
part_ofPaHa01g11570.1-CDS-1-1787993825:16909814..16910097mRNAPaHa01g11570.1
CDS
part_ofPaHa01g11570.1-CDS-1-1787993825:16910194..16910388mRNAPaHa01g11570.1
CDS
part_ofPaHa01g11570.1-CDS-1-1787993825:16911080..16911140mRNAPaHa01g11570.1
exon
part_ofPaHa01g11570.1-exon-1-1787993825:16900924..16901288mRNAPaHa01g11570.1
exon
part_ofPaHa01g11570.1-exon-1-1787993825:16903576..16903679mRNAPaHa01g11570.1
exon
part_ofPaHa01g11570.1-exon-1-1787993825:16905167..16905227mRNAPaHa01g11570.1
exon
part_ofPaHa01g11570.1-exon-1-1787993825:16905782..16905856mRNAPaHa01g11570.1
exon
part_ofPaHa01g11570.1-exon-1-1787993825:16905999..16906073mRNAPaHa01g11570.1
exon
part_ofPaHa01g11570.1-exon-1-1787993825:16906165..16906212mRNAPaHa01g11570.1
exon
part_ofPaHa01g11570.1-exon-1-1787993825:16906449..16906517mRNAPaHa01g11570.1
exon
part_ofPaHa01g11570.1-exon-1-1787993825:16907338..16908111mRNAPaHa01g11570.1
exon
part_ofPaHa01g11570.1-exon-1-1787993825:16908209..16908257mRNAPaHa01g11570.1
exon
part_ofPaHa01g11570.1-exon-1-1787993825:16909814..16910097mRNAPaHa01g11570.1
exon
part_ofPaHa01g11570.1-exon-1-1787993825:16910194..16910388mRNAPaHa01g11570.1
exon
part_ofPaHa01g11570.1-exon-1-1787993825:16911080..16911140mRNAPaHa01g11570.1
