Hass · gene

PaHa_c233g00180

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

426
bp
unplaced_contig_233:15,030–15,455
genomic location
Record overview

Feature identity

Identifier
PaHa_c233g00180
Feature type
gene
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
426 bp
Genomic location
unplaced_contig_233:15,030–15,455
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: KIN28 | Seed ortholog: 329885.A0A4U0UJD6 | eggNOG OG: Pkinase|333ECU@2759
Gene Ontology
GO:0000307 cyclin-dependent protein kinase holoenzyme complex; GO:0000439 transcription factor TFIIH core complex; GO:0001650 fibrillar center; GO:0004672 protein kinase activity; GO:0004674 protein serine/threonine kinase activity; GO:0004693 cyclin-dependent protein serine/threonine kinase activity; GO:0005515 protein binding; GO:0005524 ATP binding; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005675 transcription factor TFIIH holo complex; GO:0005737 cytoplasm; GO:0005829 cytosol; GO:0006289 nucleotide-excision repair; GO:0006366 transcription by RNA polymerase II; GO:0006367 transcription initiation at RNA polymerase II promoter; GO:0006468 protein phosphorylation; GO:0008094 ATP-dependent activity, acting on DNA; GO:0008353 RNA polymerase II CTD heptapeptide repeat kinase activity; GO:0031981 nuclear lumen; GO:0042585 germinal vesicle; GO:0042795 snRNA transcription by RNA polymerase II; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0050821 protein stabilization; GO:0051726 regulation of cell cycle; GO:0070516 CAK-ERCC2 complex; GO:0070985 transcription factor TFIIK complex; GO:0106310 protein serine kinase activity; GO:0140836 RNA polymerase II CTD heptapeptide repeat S5 kinase activity; GO:1904146 positive regulation of meiotic cell cycle process involved in oocyte maturation; GO:2000045 regulation of G1/S transition of mitotic cell cycle
KEGG
EC: ec:2.7.11.22, ec:2.7.11.23 | KO: K02202 | Pathway: 03022, 03420 | BRITE: 00001, 01000, 01001, 03019, 03021, 03400
Biological context

Connected feature records

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