Hass · gene

PaHa_c200g00210

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

5,070
bp
unplaced_contig_200:21,103–26,561
genomic location
Record overview

Feature identity

Identifier
PaHa_c200g00210
Feature type
gene
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
5,070 bp
Genomic location
unplaced_contig_200:21,103–26,561
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: HCR1 | Seed ortholog: 321146.A0A139GZR2 | COG: S | eggNOG OG: Fungal_trans_2@131567|QY-12, Fungal_trans_2@4751|ALT-17, Zn_clus@131567|A-1*, Zn_clus@2759|FdT-29, Zn_clus@4751|ToN-38
Gene Ontology
GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005829 cytosol; GO:0006357 regulation of transcription by RNA polymerase II; GO:0008270 zinc ion binding; GO:0010811 positive regulation of cell-substrate adhesion; GO:0019740 nitrogen utilization; GO:0030447 filamentous growth; GO:0044011 single-species biofilm formation on inanimate substrate; GO:0044182 filamentous growth of a population of unicellular organisms; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0051701 biological process involved in interaction with host; GO:1900189 positive regulation of cell adhesion involved in single-species biofilm formation; GO:1900191 negative regulation of single-species biofilm formation
KEGG
KO: K09245 | BRITE: 00001, 03000
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.