Feature identity
- Identifier
- PaHa03g31140.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,836 bp
- Genomic location
- 3:81,172,917–81,182,008
- Strand
- +
Hass · mRNA
PaHa03g31140.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,836
- bp
- 3:81,172,917–81,182,008
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa03g31140
- eggNOG
- Preferred name: MED17 | Seed ortholog: 337451.A0A443NFW0 | COG: S | eggNOG OG: Med17@2759|A-1
- Gene Ontology
- GO:0000979 RNA polymerase II core promoter sequence-specific DNA binding; GO:0003712 transcription coregulator activity; GO:0003713 transcription coactivator activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0006974 DNA damage response; GO:0009640 photomorphogenesis; GO:0016592 mediator complex; GO:0035196 miRNA processing; GO:0042809 nuclear vitamin D receptor binding; GO:0046966 nuclear thyroid hormone receptor binding; GO:0061630 ubiquitin protein ligase activity; GO:0140297 DNA-binding transcription factor binding
- KEGG
- KO: K15133 | Pathway: 04919 | BRITE: 00001, 03021
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa03g31140.1-protein
derives_frommRNAPaHa03g31140.1
mRNAPaHa03g31140.1
part_ofgenePaHa03g31140
CDS
part_ofPaHa03g31140.1-CDS-3-1787993825:81172917..81173005mRNAPaHa03g31140.1
CDS
part_ofPaHa03g31140.1-CDS-3-1787993825:81173102..81173300mRNAPaHa03g31140.1
CDS
part_ofPaHa03g31140.1-CDS-3-1787993825:81173381..81173494mRNAPaHa03g31140.1
CDS
part_ofPaHa03g31140.1-CDS-3-1787993825:81174275..81174360mRNAPaHa03g31140.1
CDS
part_ofPaHa03g31140.1-CDS-3-1787993825:81174450..81174846mRNAPaHa03g31140.1
CDS
part_ofPaHa03g31140.1-CDS-3-1787993825:81177509..81177791mRNAPaHa03g31140.1
CDS
part_ofPaHa03g31140.1-CDS-3-1787993825:81177959..81177981mRNAPaHa03g31140.1
CDS
part_ofPaHa03g31140.1-CDS-3-1787993825:81178415..81178735mRNAPaHa03g31140.1
CDS
part_ofPaHa03g31140.1-CDS-3-1787993825:81181685..81182008mRNAPaHa03g31140.1
exon
part_ofPaHa03g31140.1-exon-3-1787993825:81172917..81173005mRNAPaHa03g31140.1
exon
part_ofPaHa03g31140.1-exon-3-1787993825:81173102..81173300mRNAPaHa03g31140.1
exon
part_ofPaHa03g31140.1-exon-3-1787993825:81173381..81173494mRNAPaHa03g31140.1
exon
part_ofPaHa03g31140.1-exon-3-1787993825:81174275..81174360mRNAPaHa03g31140.1
exon
part_ofPaHa03g31140.1-exon-3-1787993825:81174450..81174846mRNAPaHa03g31140.1
exon
part_ofPaHa03g31140.1-exon-3-1787993825:81177509..81177791mRNAPaHa03g31140.1
exon
part_ofPaHa03g31140.1-exon-3-1787993825:81177959..81177981mRNAPaHa03g31140.1
exon
part_ofPaHa03g31140.1-exon-3-1787993825:81178415..81178735mRNAPaHa03g31140.1
exon
part_ofPaHa03g31140.1-exon-3-1787993825:81181685..81182008mRNAPaHa03g31140.1
