Feature identity
- Identifier
- PaHa03g30920.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,218 bp
- Genomic location
- 3:80,815,871–80,848,241
- Strand
- +
Hass · mRNA
PaHa03g30920.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,218
- bp
- 3:80,815,871–80,848,241
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa03g30920
- eggNOG
- Preferred name: LOC123128283 | Seed ortholog: 4615.A0A199V158 | COG: S | eggNOG OG: K-box@131567|A-1*, K-box@2759|F-3, K-box@3398|Fw-11!, K-box@35493|M-4, SRF-TF@131567|A-1*, SRF-TF@2759|C-2!, SRF-TF@3398|BGP-26!, SRF-TF@35493|jX-20
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0007584 response to nutrient; GO:0010167 response to nitrate; GO:0010440 stomatal lineage progression; GO:0042803 protein homodimerization activity; GO:0048527 lateral root development; GO:0048578 positive regulation of long-day photoperiodism, flowering; GO:0048586 regulation of long-day photoperiodism, flowering; GO:0071249 cellular response to nitrate
- KEGG
- KO: K09264 | Pathway: 04010, 04011, 04013, 04022, 04111, 04371, 04921, 04928, 05166, 05202, 05203, 05418 | BRITE: 00001, 03000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa03g30920.1-protein
derives_frommRNAPaHa03g30920.1
mRNAPaHa03g30920.1
part_ofgenePaHa03g30920
CDS
part_ofPaHa03g30920.1-CDS-3-1787993825:80815871..80816156mRNAPaHa03g30920.1
CDS
part_ofPaHa03g30920.1-CDS-3-1787993825:80818136..80818644mRNAPaHa03g30920.1
CDS
part_ofPaHa03g30920.1-CDS-3-1787993825:80827447..80827661mRNAPaHa03g30920.1
CDS
part_ofPaHa03g30920.1-CDS-3-1787993825:80841815..80841893mRNAPaHa03g30920.1
CDS
part_ofPaHa03g30920.1-CDS-3-1787993825:80848113..80848241mRNAPaHa03g30920.1
exon
part_ofPaHa03g30920.1-exon-3-1787993825:80815871..80816156mRNAPaHa03g30920.1
exon
part_ofPaHa03g30920.1-exon-3-1787993825:80818136..80818644mRNAPaHa03g30920.1
exon
part_ofPaHa03g30920.1-exon-3-1787993825:80827447..80827661mRNAPaHa03g30920.1
exon
part_ofPaHa03g30920.1-exon-3-1787993825:80841815..80841893mRNAPaHa03g30920.1
exon
part_ofPaHa03g30920.1-exon-3-1787993825:80848113..80848241mRNAPaHa03g30920.1
