Hass · gene

PaHa_c101g00370

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

912
bp
unplaced_contig_101:50,890–51,925
genomic location
Record overview

Feature identity

Identifier
PaHa_c101g00370
Feature type
gene
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
912 bp
Genomic location
unplaced_contig_101:50,890–51,925
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: pum | Seed ortholog: 1569628.A0A316UWD6 | COG: S | eggNOG OG: PUF@131567|Dq-15, PUF@2759|FE-16
Gene Ontology
GO:0000278 mitotic cell cycle; GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay; GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening; GO:0000325 plant-type vacuole; GO:0000900 mRNA regulatory element binding translation repressor activity; GO:0000932 P-body; GO:0000956 nuclear-transcribed mRNA catabolic process; GO:0001501 skeletal system development; GO:0001942 hair follicle development; GO:0003723 RNA binding; GO:0003727 single-stranded RNA binding; GO:0003729 mRNA binding; GO:0003730 mRNA 3'-UTR binding; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005635 nuclear envelope; GO:0005654 nucleoplasm; GO:0005737 cytoplasm; GO:0005783 endoplasmic reticulum; GO:0005829 cytosol; GO:0006402 mRNA catabolic process; GO:0006417 regulation of translation; GO:0006970 response to osmotic stress; GO:0007005 mitochondrion organization; GO:0007140 male meiotic nuclear division; GO:0007268 chemical synaptic transmission; GO:0007281 germ cell development; GO:0007283 spermatogenesis; GO:0007616 long-term memory; GO:0008150 biological_process; GO:0008258 head involution; GO:0008298 intracellular mRNA localization; GO:0008344 adult locomotory behavior; GO:0008354 primordial germ cell migration; GO:0008582 regulation of synaptic assembly at neuromuscular junction; GO:0008595 anterior/posterior axis specification, embryo; GO:0009060 aerobic respiration; GO:0009651 response to salt stress; GO:0009819 drought recovery; GO:0010494 cytoplasmic stress granule; GO:0010608 post-transcriptional regulation of gene expression; GO:0010629 negative regulation of gene expression; GO:0010795 regulation of ubiquinone biosynthetic process; GO:0016071 mRNA metabolic process; GO:0016441 post-transcriptional gene silencing; GO:0016477 cell migration; GO:0017148 negative regulation of translation; GO:0019094 germ plasm mRNA localization; GO:0022904 respiratory electron transport chain; GO:0030424 axon; GO:0030587 sorocarp development; GO:0031594 neuromuscular junction; GO:0031965 nuclear membrane; GO:0032473 cytoplasmic side of mitochondrial outer membrane; GO:0034063 cytoplasmic stress granule assembly; GO:0034399 nuclear periphery; GO:0035196 miRNA processing; GO:0035198 miRNA binding; GO:0042059 negative regulation of epidermal growth factor receptor signaling pathway; GO:0042149 cellular response to glucose starvation; GO:0043025 neuronal cell body; GO:0043186 P granule; GO:0043409 negative regulation of MAPK cascade; GO:0043488 regulation of mRNA stability; GO:0044528 regulation of mitochondrial mRNA stability; GO:0045727 positive regulation of translation; GO:0045786 negative regulation of cell cycle; GO:0045892 negative regulation of DNA-templated transcription; GO:0048149 behavioral response to ethanol; GO:0048471 perinuclear region of cytoplasm; GO:0048477 oogenesis; GO:0048687 positive regulation of sprouting of injured axon; GO:0048813 dendrite morphogenesis; GO:0048863 stem cell differentiation; GO:0050804 modulation of chemical synaptic transmission; GO:0051276 chromosome organization; GO:0051607 defense response to virus; GO:0051646 mitochondrion localization; GO:0051726 regulation of cell cycle; GO:0051983 regulation of chromosome segregation; GO:0060213 positive regulation of nuclear-transcribed mRNA poly(A) tail shortening; GO:0060612 adipose tissue development; GO:0060964 regulation of miRNA-mediated gene silencing; GO:0061157 mRNA destabilization; GO:0061158 3'-UTR-mediated mRNA destabilization; GO:0061176 type Ib terminal bouton; GO:0061177 type Is terminal bouton; GO:0062104 pumilio-response element binding; GO:0071598 neuronal ribonucleoprotein granule; GO:0097482 muscle cell postsynaptic specialization; GO:0098794 postsynapse; GO:0098978 glutamatergic synapse; GO:0106222 lncRNA binding; GO:0150052 regulation of postsynapse assembly; GO:0170054 ribonuclease activator activity; GO:1900153 positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay; GO:1900246 positive regulation of RIG-I signaling pathway; GO:1901835 positive regulation of deadenylation-independent decapping of nuclear-transcribed mRNA; GO:1904580 regulation of intracellular mRNA localization; GO:1905762 CCR4-NOT complex binding; GO:1990825 sequence-specific mRNA binding; GO:2000637 positive regulation of miRNA-mediated gene silencing
KEGG
EC: ec:3.6.5.5 | KO: K17943 | Pathway: 04144, 05017 | BRITE: 00001
Biological context

Connected feature records

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