Hass · gene

PaHa_c101g00090

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

900
bp
unplaced_contig_101:7,696–8,656
genomic location
Record overview

Feature identity

Identifier
PaHa_c101g00090
Feature type
gene
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
900 bp
Genomic location
unplaced_contig_101:7,696–8,656
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: snf21 | Seed ortholog: 861557.E3S800 | COG: S | eggNOG OG: Bromodomain@131567|Bs-8, Bromodomain@2759|Fv-10, HSA@131567|A-1*, HSA@2759|Cs-10, Helicase_C|A47CGA@131567, Helicase_C|A47CGA@2759, QLQ@2759|A-1, SNF2-rel_dom@131567|Cd-9, SNF2-rel_dom@2759|mA-17, SnAC@2759|A-1
Gene Ontology
GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000182 rDNA binding; GO:0000775 chromosome, centromeric region; GO:0000785 chromatin; GO:0003690 double-stranded DNA binding; GO:0003713 transcription coactivator activity; GO:0004386 helicase activity; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0006261 DNA-templated DNA replication; GO:0006284 base-excision repair; GO:0006302 double-strand break repair; GO:0006337 nucleosome disassembly; GO:0006338 chromatin remodeling; GO:0006355 regulation of DNA-templated transcription; GO:0006357 regulation of transcription by RNA polymerase II; GO:0006368 transcription elongation by RNA polymerase II; GO:0007010 cytoskeleton organization; GO:0007059 chromosome segregation; GO:0007064 mitotic sister chromatid cohesion; GO:0008150 biological_process; GO:0010629 negative regulation of gene expression; GO:0015616 DNA translocase activity; GO:0016514 SWI/SNF complex; GO:0016586 RSC-type complex; GO:0016887 ATP hydrolysis activity; GO:0030447 filamentous growth; GO:0031490 chromatin DNA binding; GO:0031492 nucleosomal DNA binding; GO:0031496 positive regulation of mating type switching; GO:0033696 heterochromatin boundary formation; GO:0034080 CENP-A containing chromatin assembly; GO:0034198 cellular response to amino acid starvation; GO:0035973 aggrephagy; GO:0036178 filamentous growth of a population of unicellular organisms in response to neutral pH; GO:0036180 filamentous growth of a population of unicellular organisms in response to biotic stimulus; GO:0036244 cellular response to neutral pH; GO:0042148 DNA strand invasion; GO:0044182 filamentous growth of a population of unicellular organisms; GO:0045815 transcription initiation-coupled chromatin remodeling; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0051321 meiotic cell cycle; GO:0051382 kinetochore assembly; GO:0061629 RNA polymerase II-specific DNA-binding transcription factor binding; GO:0072686 mitotic spindle; GO:0120262 negative regulation of heterochromatin organization; GO:0140008 histone H4 reader activity; GO:0140015 histone H3K14ac reader activity; GO:0140054 histone H2A reader activity; GO:0140463 chromatin-protein adaptor activity; GO:0140566 histone reader activity; GO:0140658 ATP-dependent chromatin remodeler activity; GO:0140751 histone octamer slider activity; GO:1900189 positive regulation of cell adhesion involved in single-species biofilm formation; GO:1900231 regulation of single-species biofilm formation on inanimate substrate; GO:1900430 positive regulation of filamentous growth of a population of unicellular organisms; GO:1900442 positive regulation of filamentous growth of a population of unicellular organisms in response to neutral pH; GO:1900445 positive regulation of filamentous growth of a population of unicellular organisms in response to biotic stimulus; GO:2000219 positive regulation of invasive growth in response to glucose limitation
KEGG
EC: ec:2.3.1.48, ec:2.7.11.1 | KO: K11786 | Pathway: 03082, 04714, 05225 | BRITE: 00001, 03021, 03036
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.