Feature identity
- Identifier
- PaHa03g29500.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 3,114 bp
- Genomic location
- 3:77,974,863–78,020,955
- Strand
- −
Hass · mRNA
PaHa03g29500.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 3,114
- bp
- 3:77,974,863–78,020,955
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa03g29500
- eggNOG
- Preferred name: LOC107933378 | Seed ortholog: 3983.A0A2C9URN2 | COG: S | eggNOG OG: HA2@131567|Ay-8, HA2@1437183|Lys-43, HA2@2759|TJ-16, Helicase_C|KFC4E0@2759, Helicase_C|KFC4E0@3398, OB_NTP_bind@131567|C-2, OB_NTP_bind@2759|YK-17, OB_NTP_bind@3398|CUn-30
- Gene Ontology
- GO:0000182 rDNA binding; GO:0003723 RNA binding; GO:0003724 RNA helicase activity; GO:0003725 double-stranded RNA binding; GO:0003729 mRNA binding; GO:0005515 protein binding; GO:0005634 nucleus; GO:0008186 ATP-dependent activity, acting on RNA; GO:0008380 RNA splicing; GO:0009793 embryo development ending in seed dormancy; GO:0016020 membrane; GO:0035194 regulatory ncRNA-mediated post-transcriptional gene silencing; GO:0038187 pattern recognition receptor activity; GO:0042802 identical protein binding; GO:0043023 ribosomal large subunit binding; GO:0043130 ubiquitin binding; GO:0060090 molecular adaptor activity; GO:0140297 DNA-binding transcription factor binding
- KEGG
- EC: ec:5.6.2.6 | KO: K12813 | Pathway: 03040 | BRITE: 00001, 01000, 03041
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa03g29500.1-protein
derives_frommRNAPaHa03g29500.1
mRNAPaHa03g29500.1
part_ofgenePaHa03g29500
CDS
part_ofPaHa03g29500.1-CDS-3-1787993825:77974863..77974912mRNAPaHa03g29500.1
CDS
part_ofPaHa03g29500.1-CDS-3-1787993825:77974978..77975050mRNAPaHa03g29500.1
CDS
part_ofPaHa03g29500.1-CDS-3-1787993825:77975188..77975250mRNAPaHa03g29500.1
CDS
part_ofPaHa03g29500.1-CDS-3-1787993825:77975810..77975910mRNAPaHa03g29500.1
CDS
part_ofPaHa03g29500.1-CDS-3-1787993825:77976014..77976137mRNAPaHa03g29500.1
CDS
part_ofPaHa03g29500.1-CDS-3-1787993825:77983225..77983287mRNAPaHa03g29500.1
CDS
part_ofPaHa03g29500.1-CDS-3-1787993825:77983397..77984437mRNAPaHa03g29500.1
CDS
part_ofPaHa03g29500.1-CDS-3-1787993825:77984528..77984594mRNAPaHa03g29500.1
CDS
part_ofPaHa03g29500.1-CDS-3-1787993825:77984677..77984792mRNAPaHa03g29500.1
CDS
part_ofPaHa03g29500.1-CDS-3-1787993825:77985593..77985679mRNAPaHa03g29500.1
CDS
part_ofPaHa03g29500.1-CDS-3-1787993825:77992082..77992171mRNAPaHa03g29500.1
CDS
part_ofPaHa03g29500.1-CDS-3-1787993825:77999393..77999461mRNAPaHa03g29500.1
CDS
part_ofPaHa03g29500.1-CDS-3-1787993825:77999711..77999779mRNAPaHa03g29500.1
CDS
part_ofPaHa03g29500.1-CDS-3-1787993825:77999893..77999950mRNAPaHa03g29500.1
CDS
part_ofPaHa03g29500.1-CDS-3-1787993825:78000093..78000150mRNAPaHa03g29500.1
CDS
part_ofPaHa03g29500.1-CDS-3-1787993825:78002324..78002391mRNAPaHa03g29500.1
CDS
part_ofPaHa03g29500.1-CDS-3-1787993825:78002551..78002630mRNAPaHa03g29500.1
CDS
part_ofPaHa03g29500.1-CDS-3-1787993825:78005222..78005285mRNAPaHa03g29500.1
CDS
part_ofPaHa03g29500.1-CDS-3-1787993825:78008560..78008631mRNAPaHa03g29500.1
CDS
part_ofPaHa03g29500.1-CDS-3-1787993825:78008797..78008856mRNAPaHa03g29500.1
CDS
part_ofPaHa03g29500.1-CDS-3-1787993825:78013400..78013454mRNAPaHa03g29500.1
CDS
part_ofPaHa03g29500.1-CDS-3-1787993825:78013538..78013571mRNAPaHa03g29500.1
CDS
part_ofPaHa03g29500.1-CDS-3-1787993825:78014720..78014806mRNAPaHa03g29500.1
CDS
part_ofPaHa03g29500.1-CDS-3-1787993825:78016995..78017081mRNAPaHa03g29500.1
CDS
part_ofPaHa03g29500.1-CDS-3-1787993825:78017198..78017389mRNAPaHa03g29500.1
CDS
part_ofPaHa03g29500.1-CDS-3-1787993825:78020658..78020788mRNAPaHa03g29500.1
CDS
part_ofPaHa03g29500.1-CDS-3-1787993825:78020901..78020955mRNAPaHa03g29500.1
exon
part_ofPaHa03g29500.1-exon-3-1787993825:77974863..77974912mRNAPaHa03g29500.1
exon
part_ofPaHa03g29500.1-exon-3-1787993825:77974978..77975050mRNAPaHa03g29500.1
exon
part_ofPaHa03g29500.1-exon-3-1787993825:77975188..77975250mRNAPaHa03g29500.1
exon
part_ofPaHa03g29500.1-exon-3-1787993825:77975810..77975910mRNAPaHa03g29500.1
exon
part_ofPaHa03g29500.1-exon-3-1787993825:77976014..77976137mRNAPaHa03g29500.1
exon
part_ofPaHa03g29500.1-exon-3-1787993825:77983225..77983287mRNAPaHa03g29500.1
exon
part_ofPaHa03g29500.1-exon-3-1787993825:77983397..77984437mRNAPaHa03g29500.1
exon
part_ofPaHa03g29500.1-exon-3-1787993825:77984528..77984594mRNAPaHa03g29500.1
exon
part_ofPaHa03g29500.1-exon-3-1787993825:77984677..77984792mRNAPaHa03g29500.1
exon
part_ofPaHa03g29500.1-exon-3-1787993825:77985593..77985679mRNAPaHa03g29500.1
exon
part_ofPaHa03g29500.1-exon-3-1787993825:77992082..77992171mRNAPaHa03g29500.1
exon
part_ofPaHa03g29500.1-exon-3-1787993825:77999393..77999461mRNAPaHa03g29500.1
exon
part_ofPaHa03g29500.1-exon-3-1787993825:77999711..77999779mRNAPaHa03g29500.1
exon
part_ofPaHa03g29500.1-exon-3-1787993825:77999893..77999950mRNAPaHa03g29500.1
exon
part_ofPaHa03g29500.1-exon-3-1787993825:78000093..78000150mRNAPaHa03g29500.1
exon
part_ofPaHa03g29500.1-exon-3-1787993825:78002324..78002391mRNAPaHa03g29500.1
exon
part_ofPaHa03g29500.1-exon-3-1787993825:78002551..78002630mRNAPaHa03g29500.1
exon
part_ofPaHa03g29500.1-exon-3-1787993825:78005222..78005285mRNAPaHa03g29500.1
exon
part_ofPaHa03g29500.1-exon-3-1787993825:78008560..78008631mRNAPaHa03g29500.1
exon
part_ofPaHa03g29500.1-exon-3-1787993825:78008797..78008856mRNAPaHa03g29500.1
exon
part_ofPaHa03g29500.1-exon-3-1787993825:78013400..78013454mRNAPaHa03g29500.1
exon
part_ofPaHa03g29500.1-exon-3-1787993825:78013538..78013571mRNAPaHa03g29500.1
exon
part_ofPaHa03g29500.1-exon-3-1787993825:78014720..78014806mRNAPaHa03g29500.1
exon
part_ofPaHa03g29500.1-exon-3-1787993825:78016995..78017081mRNAPaHa03g29500.1
exon
part_ofPaHa03g29500.1-exon-3-1787993825:78017198..78017389mRNAPaHa03g29500.1
exon
part_ofPaHa03g29500.1-exon-3-1787993825:78020658..78020788mRNAPaHa03g29500.1
exon
part_ofPaHa03g29500.1-exon-3-1787993825:78020901..78020955mRNAPaHa03g29500.1
