Feature identity
- Identifier
- PaHa03g29380.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 2,109 bp
- Genomic location
- 3:77,739,238–77,764,495
- Strand
- −
Hass · mRNA
PaHa03g29380.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 2,109
- bp
- 3:77,739,238–77,764,495
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa03g29380
- eggNOG
- Preferred name: VIP4 | Seed ortholog: 337451.A0A3S3MIT1 | COG: S | eggNOG OG: Leo1@2759|A-1
- Gene Ontology
- GO:0003674 molecular_function; GO:0003712 transcription coregulator activity; GO:0003723 RNA binding; GO:0005515 protein binding; GO:0005634 nucleus; GO:0009910 negative regulation of flower development; GO:0010048 vernalization response; GO:0016593 Cdc73/Paf1 complex; GO:0061629 RNA polymerase II-specific DNA-binding transcription factor binding; GO:1990269 RNA polymerase II C-terminal domain phosphoserine binding
- KEGG
- KO: K15177 | BRITE: 00001, 03021
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa03g29380.1-protein
derives_frommRNAPaHa03g29380.1
mRNAPaHa03g29380.1
part_ofgenePaHa03g29380
CDS
part_ofPaHa03g29380.1-CDS-3-1787993825:77739238..77739279mRNAPaHa03g29380.1
CDS
part_ofPaHa03g29380.1-CDS-3-1787993825:77741291..77741447mRNAPaHa03g29380.1
CDS
part_ofPaHa03g29380.1-CDS-3-1787993825:77742213..77742475mRNAPaHa03g29380.1
CDS
part_ofPaHa03g29380.1-CDS-3-1787993825:77742616..77742732mRNAPaHa03g29380.1
CDS
part_ofPaHa03g29380.1-CDS-3-1787993825:77743775..77743906mRNAPaHa03g29380.1
CDS
part_ofPaHa03g29380.1-CDS-3-1787993825:77747280..77747459mRNAPaHa03g29380.1
CDS
part_ofPaHa03g29380.1-CDS-3-1787993825:77747658..77747789mRNAPaHa03g29380.1
CDS
part_ofPaHa03g29380.1-CDS-3-1787993825:77751758..77751934mRNAPaHa03g29380.1
CDS
part_ofPaHa03g29380.1-CDS-3-1787993825:77752794..77752976mRNAPaHa03g29380.1
CDS
part_ofPaHa03g29380.1-CDS-3-1787993825:77753784..77753916mRNAPaHa03g29380.1
CDS
part_ofPaHa03g29380.1-CDS-3-1787993825:77758524..77758619mRNAPaHa03g29380.1
CDS
part_ofPaHa03g29380.1-CDS-3-1787993825:77758874..77759220mRNAPaHa03g29380.1
CDS
part_ofPaHa03g29380.1-CDS-3-1787993825:77764120..77764149mRNAPaHa03g29380.1
CDS
part_ofPaHa03g29380.1-CDS-3-1787993825:77764376..77764495mRNAPaHa03g29380.1
exon
part_ofPaHa03g29380.1-exon-3-1787993825:77739238..77739279mRNAPaHa03g29380.1
exon
part_ofPaHa03g29380.1-exon-3-1787993825:77741291..77741447mRNAPaHa03g29380.1
exon
part_ofPaHa03g29380.1-exon-3-1787993825:77742213..77742475mRNAPaHa03g29380.1
exon
part_ofPaHa03g29380.1-exon-3-1787993825:77742616..77742732mRNAPaHa03g29380.1
exon
part_ofPaHa03g29380.1-exon-3-1787993825:77743775..77743906mRNAPaHa03g29380.1
exon
part_ofPaHa03g29380.1-exon-3-1787993825:77747280..77747459mRNAPaHa03g29380.1
exon
part_ofPaHa03g29380.1-exon-3-1787993825:77747658..77747789mRNAPaHa03g29380.1
exon
part_ofPaHa03g29380.1-exon-3-1787993825:77751758..77751934mRNAPaHa03g29380.1
exon
part_ofPaHa03g29380.1-exon-3-1787993825:77752794..77752976mRNAPaHa03g29380.1
exon
part_ofPaHa03g29380.1-exon-3-1787993825:77753784..77753916mRNAPaHa03g29380.1
exon
part_ofPaHa03g29380.1-exon-3-1787993825:77758524..77758619mRNAPaHa03g29380.1
exon
part_ofPaHa03g29380.1-exon-3-1787993825:77758874..77759220mRNAPaHa03g29380.1
exon
part_ofPaHa03g29380.1-exon-3-1787993825:77764120..77764149mRNAPaHa03g29380.1
exon
part_ofPaHa03g29380.1-exon-3-1787993825:77764376..77764495mRNAPaHa03g29380.1
