Feature identity
- Identifier
- PaHa12g03710
- Feature type
- gene
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 441 bp
- Genomic location
- 12:17,874,766–17,875,206
- Strand
- −
Hass · gene
PaHa12g03710
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 441
- bp
- 12:17,874,766–17,875,206
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
- eggNOG
- Preferred name: LOC104216532 | Seed ortholog: 3885.V7BJ56 | COG: S | eggNOG OG: DUF4283@131567|A-1*, DUF4283@2231393|pW-17, DUF4283@3193|B-2, RRM_1@131567|Gk-13, RRM_1@2759|rq-21!
- Gene Ontology
- GO:0000398 mRNA splicing, via spliceosome; GO:0000785 chromatin; GO:0003677 DNA binding; GO:0003690 double-stranded DNA binding; GO:0003723 RNA binding; GO:0003729 mRNA binding; GO:0003730 mRNA 3'-UTR binding; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005628 prospore membrane; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005730 nucleolus; GO:0005737 cytoplasm; GO:0005829 cytosol; GO:0005847 mRNA cleavage and polyadenylation specificity factor complex; GO:0006396 RNA processing; GO:0006406 mRNA export from nucleus; GO:0007535 donor selection; GO:0008143 poly(A) binding; GO:0008150 biological_process; GO:0008380 RNA splicing; GO:0010494 cytoplasmic stress granule; GO:0010608 post-transcriptional regulation of gene expression; GO:0016180 snRNA processing; GO:0016607 nuclear speck; GO:0017070 U6 snRNA binding; GO:0019899 enzyme binding; GO:0030015 CCR4-NOT core complex; GO:0031124 mRNA 3'-end processing; GO:0031509 subtelomeric heterochromatin formation; GO:0034477 U6 snRNA 3'-end processing; GO:0042800 histone H3K4 methyltransferase activity; GO:0045291 mRNA trans splicing, SL addition; GO:0045815 transcription initiation-coupled chromatin remodeling; GO:0048188 Set1C/COMPASS complex; GO:0048255 mRNA stabilization; GO:0050265 RNA uridylyltransferase activity; GO:0051252 regulation of RNA metabolic process; GO:0060538 skeletal muscle organ development; GO:0071011 precatalytic spliceosome; GO:0140767 enzyme-substrate adaptor activity; GO:0140999 histone H3K4 trimethyltransferase activity; GO:0141005 transposable element silencing by heterochromatin formation; GO:0180010 co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway; GO:1902373 negative regulation of mRNA catabolic process; GO:1902794 siRNA-independent facultative heterochromatin formation; GO:1990817 poly(A) RNA polymerase activity
- KEGG
- EC: ec:2.1.1.354, ec:2.3.1.48, ec:2.3.2.27, ec:2.7.7.19, ec:2.7.7.52 | KO: K12891 | Pathway: 03040 | BRITE: 00001, 03041
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
mRNAPaHa12g03710.1
part_ofgenePaHa12g03710
