Hass · gene

PaHa12g02740

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

999
bp
12:12,753,628–12,816,334
genomic location
Record overview

Feature identity

Identifier
PaHa12g02740
Feature type
gene
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
999 bp
Genomic location
12:12,753,628–12,816,334
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: PP1 | Seed ortholog: 4432.A0A1U8AAN4 | COG: S | eggNOG OG: Metallophos@131567|AWl-19, Metallophos@1437183|nCR-47, Metallophos@2759|RnV-36!, Metallophos@3398|cTJ-42, STPPase_N@131567|A-1*, STPPase_N@1437183|eZ-29, STPPase_N@2759|Aw-12, STPPase_N@33090|Oh-22
Gene Ontology
GO:0000022 mitotic spindle elongation; GO:0000070 mitotic sister chromatid segregation; GO:0000076 DNA replication checkpoint signaling; GO:0000077 DNA damage checkpoint signaling; GO:0000131 incipient cellular bud site; GO:0000164 protein phosphatase type 1 complex; GO:0000165 MAPK cascade; GO:0000278 mitotic cell cycle; GO:0000282 cellular bud site selection; GO:0000723 telomere maintenance; GO:0000776 kinetochore; GO:0000781 chromosome, telomeric region; GO:0000785 chromatin; GO:0000791 euchromatin; GO:0001111 RNA polymerase II promoter clearance; GO:0001400 mating projection base; GO:0001525 angiogenesis; GO:0001824 blastocyst development; GO:0001889 liver development; GO:0003723 RNA binding; GO:0004721 phosphoprotein phosphatase activity; GO:0004722 protein serine/threonine phosphatase activity; GO:0005506 iron ion binding; GO:0005515 protein binding; GO:0005521 lamin binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005694 chromosome; GO:0005700 polytene chromosome; GO:0005730 nucleolus; GO:0005737 cytoplasm; GO:0005739 mitochondrion; GO:0005741 mitochondrial outer membrane; GO:0005783 endoplasmic reticulum; GO:0005811 lipid droplet; GO:0005814 centriole; GO:0005816 spindle pole body; GO:0005829 cytosol; GO:0005847 mRNA cleavage and polyadenylation specificity factor complex; GO:0005886 plasma membrane; GO:0005912 adherens junction; GO:0005925 focal adhesion; GO:0005935 cellular bud neck; GO:0005977 glycogen metabolic process; GO:0005979 regulation of glycogen biosynthetic process; GO:0005981 regulation of glycogen catabolic process; GO:0006031 chitin biosynthetic process; GO:0006366 transcription by RNA polymerase II; GO:0006368 transcription elongation by RNA polymerase II; GO:0006417 regulation of translation; GO:0006446 regulation of translational initiation; GO:0006470 protein dephosphorylation; GO:0006873 intracellular monoatomic ion homeostasis; GO:0006986 response to unfolded protein; GO:0007059 chromosome segregation; GO:0007060 male meiosis chromosome segregation; GO:0007080 mitotic metaphase chromosome alignment; GO:0007084 mitotic nuclear membrane reassembly; GO:0007094 mitotic spindle assembly checkpoint signaling; GO:0007116 regulation of cell budding; GO:0007283 spermatogenesis; GO:0007346 regulation of mitotic cell cycle; GO:0007399 nervous system development; GO:0007411 axon guidance; GO:0007611 learning or memory; GO:0008150 biological_process; GO:0008157 protein phosphatase 1 binding; GO:0008344 adult locomotory behavior; GO:0008355 olfactory learning; GO:0008360 regulation of cell shape; GO:0008542 visual learning; GO:0008608 attachment of spindle microtubules to kinetochore; GO:0009408 response to heat; GO:0009860 pollen tube growth; GO:0010288 response to lead ion; GO:0010389 regulation of G2/M transition of mitotic cell cycle; GO:0010897 negative regulation of triglyceride catabolic process; GO:0016020 membrane; GO:0016607 nuclear speck; GO:0016787 hydrolase activity; GO:0016791 phosphatase activity; GO:0017018 myosin phosphatase activity; GO:0018991 egg-laying behavior; GO:0019901 protein kinase binding; GO:0019903 protein phosphatase binding; GO:0019904 protein domain specific binding; GO:0020036 Maurer's cleft; GO:0023052 signaling; GO:0030010 establishment of cell polarity; GO:0030145 manganese ion binding; GO:0030155 regulation of cell adhesion; GO:0030182 neuron differentiation; GO:0030261 chromosome condensation; GO:0030324 lung development; GO:0030428 cell septum; GO:0030437 ascospore formation; GO:0030496 midbody; GO:0030514 negative regulation of BMP signaling pathway; GO:0030837 negative regulation of actin filament polymerization; GO:0030846 termination of RNA polymerase II transcription, poly(A)-coupled; GO:0031143 pseudopodium; GO:0031272 regulation of pseudopodium assembly; GO:0031297 replication fork processing; GO:0031536 positive regulation of exit from mitosis; GO:0031965 nuclear membrane; GO:0031981 nuclear lumen; GO:0032153 cell division site; GO:0032154 cleavage furrow; GO:0032174 cellular bud neck septin collar; GO:0032880 regulation of protein localization; GO:0032922 circadian regulation of gene expression; GO:0032968 positive regulation of transcription elongation by RNA polymerase II; GO:0032991 protein-containing complex; GO:0034244 negative regulation of transcription elongation by RNA polymerase II; GO:0034501 protein localization to kinetochore; GO:0036064 ciliary basal body; GO:0040011 locomotion; GO:0042587 glycogen granule; GO:0042752 regulation of circadian rhythm; GO:0043021 ribonucleoprotein complex binding; GO:0043025 neuronal cell body; GO:0043153 entrainment of circadian clock by photoperiod; GO:0043197 dendritic spine; GO:0043204 perikaryon; GO:0043247 telomere maintenance in response to DNA damage; GO:0043558 regulation of translational initiation in response to stress; GO:0044877 protein-containing complex binding; GO:0045089 positive regulation of innate immune response; GO:0045725 positive regulation of glycogen biosynthetic process; GO:0045842 positive regulation of mitotic metaphase/anaphase transition; GO:0045879 negative regulation of smoothened signaling pathway; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0046579 positive regulation of Ras protein signal transduction; GO:0046628 positive regulation of insulin receptor signaling pathway; GO:0046822 regulation of nucleocytoplasmic transport; GO:0046914 transition metal ion binding; GO:0046982 protein heterodimerization activity; GO:0048477 oogenesis; GO:0048754 branching morphogenesis of an epithelial tube; GO:0048768 root hair cell tip growth; GO:0050115 myosin-light-chain-phosphatase activity; GO:0050821 protein stabilization; GO:0050829 defense response to Gram-negative bacterium; GO:0051211 anisotropic cell growth; GO:0051225 spindle assembly; GO:0051276 chromosome organization; GO:0051286 cell tip; GO:0051321 meiotic cell cycle; GO:0051726 regulation of cell cycle; GO:0060026 convergent extension; GO:0060028 convergent extension involved in axis elongation; GO:0060252 positive regulation of glial cell proliferation; GO:0061638 CENP-A containing chromatin; GO:0072357 PTW/PP1 phosphatase complex; GO:0072542 protein phosphatase activator activity; GO:0090263 positive regulation of canonical Wnt signaling pathway; GO:0097225 sperm midpiece; GO:0097229 sperm end piece; GO:0097681 double-strand break repair via alternative nonhomologous end joining; GO:0097723 amoeboid sperm motility; GO:0098641 cadherin binding involved in cell-cell adhesion; GO:0098653 centromere clustering; GO:0098723 skeletal muscle myofibril; GO:0098793 presynapse; GO:0098794 postsynapse; GO:0098978 glutamatergic synapse; GO:0140472 cell cortex of non-growing cell tip; GO:0180005 RNA polymerase II CTD heptapeptide repeat T4 phosphatase activity; GO:0180007 RNA polymerase II CTD heptapeptide repeat S5 phosphatase activity; GO:0180010 co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway; GO:1900459 positive regulation of brassinosteroid mediated signaling pathway; GO:1901567 fatty acid derivative binding; GO:1901901 regulation of protein localization to cell division site involved in cytokinesis; GO:1902425 positive regulation of attachment of mitotic spindle microtubules to kinetochore; GO:1902426 deactivation of mitotic spindle assembly checkpoint; GO:1902716 cell cortex of growing cell tip; GO:1903501 positive regulation of mitotic actomyosin contractile ring assembly; GO:1904547 regulation of cellular response to glucose starvation; GO:1904595 positive regulation of termination of RNA polymerase II transcription; GO:1990567 DPS complex; GO:2000114 regulation of establishment of cell polarity; GO:2000370 positive regulation of clathrin-dependent endocytosis; GO:2000784 positive regulation of establishment of cell polarity regulating cell shape; GO:2000806 positive regulation of termination of RNA polymerase II transcription, poly(A)-coupled; GO:2001241 positive regulation of extrinsic apoptotic signaling pathway in absence of ligand
KEGG
EC: ec:3.1.3.16 | KO: K06269 | Pathway: 03015 | BRITE: 00001, 01000, 01009, 03019, 03021, 03041
Biological context

Connected feature records

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