Feature identity
- Identifier
- PaHa03g25380.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,443 bp
- Genomic location
- 3:70,730,333–70,735,153
- Strand
- −
Hass · mRNA
PaHa03g25380.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,443
- bp
- 3:70,730,333–70,735,153
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa03g25380
- eggNOG
- Preferred name: AP2 | Seed ortholog: 337451.A0A3S3MI69 | COG: S | eggNOG OG: AP2@131567|Eo-12, AP2@33090|Xr-18, AP2@3398|DRe-29, AP2@58023|AYn-23
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0001222 transcription corepressor binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005730 nucleolus; GO:0006355 regulation of DNA-templated transcription; GO:0009642 response to light intensity; GO:0009658 chloroplast organization; GO:0009909 regulation of flower development; GO:0010228 vegetative to reproductive phase transition of meristem; GO:0010629 negative regulation of gene expression; GO:0042802 identical protein binding; GO:0043565 sequence-specific DNA binding; GO:0045824 negative regulation of innate immune response; GO:0080050 regulation of seed development; GO:1905392 plant organ morphogenesis
- KEGG
- KO: K09284 | BRITE: 00001, 03000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa03g25380.1-protein
derives_frommRNAPaHa03g25380.1
mRNAPaHa03g25380.1
part_ofgenePaHa03g25380
CDS
part_ofPaHa03g25380.1-CDS-3-1787993825:70730333..70730542mRNAPaHa03g25380.1
CDS
part_ofPaHa03g25380.1-CDS-3-1787993825:70731594..70731689mRNAPaHa03g25380.1
CDS
part_ofPaHa03g25380.1-CDS-3-1787993825:70733115..70733248mRNAPaHa03g25380.1
CDS
part_ofPaHa03g25380.1-CDS-3-1787993825:70733363..70733505mRNAPaHa03g25380.1
CDS
part_ofPaHa03g25380.1-CDS-3-1787993825:70733921..70734066mRNAPaHa03g25380.1
CDS
part_ofPaHa03g25380.1-CDS-3-1787993825:70734176..70734263mRNAPaHa03g25380.1
CDS
part_ofPaHa03g25380.1-CDS-3-1787993825:70734352..70734382mRNAPaHa03g25380.1
CDS
part_ofPaHa03g25380.1-CDS-3-1787993825:70734473..70734498mRNAPaHa03g25380.1
CDS
part_ofPaHa03g25380.1-CDS-3-1787993825:70734585..70735153mRNAPaHa03g25380.1
exon
part_ofPaHa03g25380.1-exon-3-1787993825:70730333..70730542mRNAPaHa03g25380.1
exon
part_ofPaHa03g25380.1-exon-3-1787993825:70731594..70731689mRNAPaHa03g25380.1
exon
part_ofPaHa03g25380.1-exon-3-1787993825:70733115..70733248mRNAPaHa03g25380.1
exon
part_ofPaHa03g25380.1-exon-3-1787993825:70733363..70733505mRNAPaHa03g25380.1
exon
part_ofPaHa03g25380.1-exon-3-1787993825:70733921..70734066mRNAPaHa03g25380.1
exon
part_ofPaHa03g25380.1-exon-3-1787993825:70734176..70734263mRNAPaHa03g25380.1
exon
part_ofPaHa03g25380.1-exon-3-1787993825:70734352..70734382mRNAPaHa03g25380.1
exon
part_ofPaHa03g25380.1-exon-3-1787993825:70734473..70734498mRNAPaHa03g25380.1
exon
part_ofPaHa03g25380.1-exon-3-1787993825:70734585..70735153mRNAPaHa03g25380.1
