Hass · gene

PaHa10g12850

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

2,589
bp
10:37,845,897–37,857,871
genomic location
Record overview

Feature identity

Identifier
PaHa10g12850
Feature type
gene
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
2,589 bp
Genomic location
10:37,845,897–37,857,871
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: neur | Seed ortholog: 337451.A0A3S3NF53 | COG: S | eggNOG OG: zf-C3HC4_3@131567|ek-18, zf-C3HC4_3@3193|Ekb-33
Gene Ontology
GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000209 protein polyubiquitination; GO:0001568 blood vessel development; GO:0001974 blood vessel remodeling; GO:0002027 regulation of heart rate; GO:0003170 heart valve development; GO:0003181 atrioventricular valve morphogenesis; GO:0003203 endocardial cushion morphogenesis; GO:0003281 ventricular septum development; GO:0003283 atrial septum development; GO:0003674 molecular_function; GO:0005634 nucleus; GO:0006310 DNA recombination; GO:0006511 ubiquitin-dependent protein catabolic process; GO:0006915 apoptotic process; GO:0007089 traversing start control point of mitotic cell cycle; GO:0007507 heart development; GO:0008150 biological_process; GO:0008284 positive regulation of cell population proliferation; GO:0008285 negative regulation of cell population proliferation; GO:0009410 response to xenobiotic stimulus; GO:0009636 response to toxic substance; GO:0010039 response to iron ion; GO:0010165 response to X-ray; GO:0010468 regulation of gene expression; GO:0010628 positive regulation of gene expression; GO:0010629 negative regulation of gene expression; GO:0010955 negative regulation of protein processing; GO:0010977 negative regulation of neuron projection development; GO:0016567 protein ubiquitination; GO:0016925 protein sumoylation; GO:0030163 protein catabolic process; GO:0030330 DNA damage response, signal transduction by p53 class mediator; GO:0030534 adult behavior; GO:0031398 positive regulation of protein ubiquitination; GO:0031647 regulation of protein stability; GO:0031648 protein destabilization; GO:0032026 response to magnesium ion; GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process; GO:0034504 protein localization to nucleus; GO:0035775 pronephric glomerulus morphogenesis; GO:0042176 regulation of protein catabolic process; GO:0042177 negative regulation of protein catabolic process; GO:0042220 response to cocaine; GO:0042415 norepinephrine metabolic process; GO:0042428 serotonin metabolic process; GO:0043066 negative regulation of apoptotic process; GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process; GO:0043518 negative regulation of DNA damage response, signal transduction by p53 class mediator; GO:0045184 establishment of protein localization; GO:0045472 response to ether; GO:0045787 positive regulation of cell cycle; GO:0045892 negative regulation of DNA-templated transcription; GO:0045931 positive regulation of mitotic cell cycle; GO:0046677 response to antibiotic; GO:0046827 positive regulation of protein export from nucleus; GO:0048545 response to steroid hormone; GO:0050790 regulation of catalytic activity; GO:0050821 protein stabilization; GO:0051149 positive regulation of muscle cell differentiation; GO:0051726 regulation of cell cycle; GO:0051865 protein autoubiquitination; GO:0060411 cardiac septum morphogenesis; GO:0065003 protein-containing complex assembly; GO:0070301 cellular response to hydrogen peroxide; GO:0071236 cellular response to antibiotic; GO:0071301 cellular response to vitamin B1; GO:0071312 cellular response to alkaloid; GO:0071363 cellular response to growth factor stimulus; GO:0071375 cellular response to peptide hormone stimulus; GO:0071391 cellular response to estrogen stimulus; GO:0071456 cellular response to hypoxia; GO:0071480 cellular response to gamma radiation; GO:0071494 cellular response to UV-C; GO:0072331 signal transduction by p53 class mediator; GO:0072537 fibroblast activation; GO:0072717 cellular response to actinomycin D; GO:0072766 centromere clustering at the mitotic interphase nuclear envelope; GO:0099149 regulation of postsynaptic neurotransmitter receptor internalization; GO:0099576 regulation of protein catabolic process at postsynapse, modulating synaptic transmission; GO:0120290 stalled replication fork localization to nuclear periphery; GO:1901797 negative regulation of signal transduction by p53 class mediator; GO:1902254 negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator; GO:1904036 negative regulation of epithelial cell apoptotic process; GO:1904404 response to formaldehyde; GO:1904707 positive regulation of vascular associated smooth muscle cell proliferation; GO:1904754 positive regulation of vascular associated smooth muscle cell migration; GO:1990000 amyloid fibril formation; GO:1990785 response to water-immersion restraint stress; GO:2001234 negative regulation of apoptotic signaling pathway
KEGG
EC: ec:2.3.2.27 | KO: K01931, K06643, K10127, K15708 | Pathway: 01522, 01524, 04068, 04110, 04115, 04120, 04144, 04151, 04218, 04625, 04919, 05131, 05163, 05165, 05169, 05200, 05202, 05203, 05205, 05206, 05214, 05215, 05218, 05219, 05220 | BRITE: 00001, 01000, 04121, 04131
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.