Hass · gene

PaHa09g12470

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

1,260
bp
9:37,350,830–37,357,554
genomic location
Record overview

Feature identity

Identifier
PaHa09g12470
Feature type
gene
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
1,260 bp
Genomic location
9:37,350,830–37,357,554
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: 11442145 | Seed ortholog: 56857.A0A200R255 | COG: S | eggNOG OG: ARID@131567|A-1*, ARID@2759|Af-7, HMG_box_2@131567|y-9, HMG_box_2@58023|Iq-17
Gene Ontology
GO:0000776 kinetochore; GO:0000785 chromatin; GO:0001181 RNA polymerase I general transcription initiation factor activity; GO:0003007 heart morphogenesis; GO:0003677 DNA binding; GO:0005515 protein binding; GO:0005654 nucleoplasm; GO:0005667 transcription regulator complex; GO:0005730 nucleolus; GO:0005886 plasma membrane; GO:0006337 nucleosome disassembly; GO:0006338 chromatin remodeling; GO:0006355 regulation of DNA-templated transcription; GO:0006357 regulation of transcription by RNA polymerase II; GO:0006360 transcription by RNA polymerase I; GO:0006361 transcription initiation at RNA polymerase I promoter; GO:0008150 biological_process; GO:0008285 negative regulation of cell population proliferation; GO:0008586 imaginal disc-derived wing vein morphogenesis; GO:0008587 imaginal disc-derived wing margin morphogenesis; GO:0010498 proteasomal protein catabolic process; GO:0016363 nuclear matrix; GO:0016514 SWI/SNF complex; GO:0016586 RSC-type complex; GO:0017053 transcription repressor complex; GO:0030071 regulation of mitotic metaphase/anaphase transition; GO:0030336 negative regulation of cell migration; GO:0034976 response to endoplasmic reticulum stress; GO:0035060 brahma complex; GO:0036503 ERAD pathway; GO:0042592 homeostatic process; GO:0045582 positive regulation of T cell differentiation; GO:0045597 positive regulation of cell differentiation; GO:0045663 positive regulation of myoblast differentiation; GO:0045893 positive regulation of DNA-templated transcription; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0048568 embryonic organ development; GO:0050821 protein stabilization; GO:0060038 cardiac muscle cell proliferation; GO:0060982 coronary artery morphogenesis; GO:0070316 regulation of G0 to G1 transition; GO:0072359 circulatory system development; GO:0098542 defense response to other organism; GO:0140658 ATP-dependent chromatin remodeler activity; GO:1905168 positive regulation of double-strand break repair via homologous recombination; GO:2000045 regulation of G1/S transition of mitotic cell cycle; GO:2000781 positive regulation of double-strand break repair; GO:2000819 regulation of nucleotide-excision repair
KEGG
EC: ec:2.1.1.354 | KO: K09188, K11680, K11765, K13172, K19195 | Pathway: 00310, 01100, 03082, 05225 | BRITE: 00001, 01000, 03000, 03021, 03036, 03041
Biological context

Connected feature records

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