Hass · gene

PaHa07g28040

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

1,584
bp
7:76,036,336–76,039,947
genomic location
Record overview

Feature identity

Identifier
PaHa07g28040
Feature type
gene
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
1,584 bp
Genomic location
7:76,036,336–76,039,947
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: PIF5 | Seed ortholog: 337451.A0A3S3QKB3 | COG: S | eggNOG OG: HLH@131221|BVX-22, HLH@131567|Zg-14!, HLH@3193|CEo-24, HLH@33090|AbI-19, HLH@3398|Iou-33, HLH@35493|AqB-20, HLH@58023|FfL-30
Gene Ontology
GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0006357 regulation of transcription by RNA polymerase II; GO:0009266 response to temperature stimulus; GO:0009408 response to heat; GO:0009409 response to cold; GO:0009585 red, far-red light phototransduction; GO:0009638 phototropism; GO:0009693 ethylene biosynthetic process; GO:0009704 de-etiolation; GO:0009723 response to ethylene; GO:0009733 response to auxin; GO:0009741 response to brassinosteroid; GO:0010017 red or far-red light signaling pathway; GO:0010161 red light signaling pathway; GO:0010244 response to low fluence blue light stimulus by blue low-fluence system; GO:0010600 regulation of auxin biosynthetic process; GO:0010928 regulation of auxin mediated signaling pathway; GO:0045893 positive regulation of DNA-templated transcription; GO:0080006 internode patterning; GO:0090229 negative regulation of red or far-red light signaling pathway; GO:0140922 positive regulation of thermomorphogenesis; GO:1902074 response to salt; GO:1905421 regulation of plant organ morphogenesis; GO:1990841 promoter-specific chromatin binding
KEGG
KO: K16189 | Pathway: 04075 | BRITE: 00001, 03000
Biological context

Connected feature records

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