Feature identity
- Identifier
- PaHa03g17940.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 876 bp
- Genomic location
- 3:56,324,893–56,327,241
- Strand
- +
Hass · mRNA
PaHa03g17940.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 876
- bp
- 3:56,324,893–56,327,241
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa03g17940
- eggNOG
- Preferred name: MYB108 | Seed ortholog: 337451.A0A3S3MWX4 | COG: S | eggNOG OG: Myb_DNA-binding@131567|AOS-27, Myb_DNA-binding@3398|KPD-43, Myb_DNA-binding@35493|EcV-37
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009620 response to fungus; GO:0009737 response to abscisic acid; GO:0012501 programmed cell death; GO:0043484 regulation of RNA splicing; GO:0120195 positive regulation of anther dehiscence; GO:1902074 response to salt
- KEGG
- EC: ec:1.17.99.9 | KO: K09422 | Pathway: 00190, 00860, 01100, 01110, 01240, 04626 | Module: M00154 | BRITE: 00001, 03000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa03g17940.1-protein
derives_frommRNAPaHa03g17940.1
mRNAPaHa03g17940.1
part_ofgenePaHa03g17940
CDS
part_ofPaHa03g17940.1-CDS-3-1787993825:56324893..56325049mRNAPaHa03g17940.1
CDS
part_ofPaHa03g17940.1-CDS-3-1787993825:56325493..56325622mRNAPaHa03g17940.1
CDS
part_ofPaHa03g17940.1-CDS-3-1787993825:56326653..56327241mRNAPaHa03g17940.1
exon
part_ofPaHa03g17940.1-exon-3-1787993825:56324893..56325049mRNAPaHa03g17940.1
exon
part_ofPaHa03g17940.1-exon-3-1787993825:56325493..56325622mRNAPaHa03g17940.1
exon
part_ofPaHa03g17940.1-exon-3-1787993825:56326653..56327241mRNAPaHa03g17940.1
