Hass · gene

PaHa07g23350

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

3,495
bp
7:67,882,302–67,919,730
genomic location
Record overview

Feature identity

Identifier
PaHa07g23350
Feature type
gene
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
3,495 bp
Genomic location
7:67,882,302–67,919,730
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC123113315 | Seed ortholog: 337451.A0A3S3MSQ1 | COG: S | eggNOG OG: DEAD@131567|BKe-25, DEAD@2759|GIu-35, DEAD@33090|JHo-39, DEAD@3398|MIZ-42, HA2@131567|O-4, HA2@2759|My-14, HA2@33090|BVR-25, HA2@3398|Clo-28, Helicase_C|I66541@131567, Helicase_C|I66541@2759, Helicase_C|I66541@3398, OB_NTP_bind@131567|B-2, OB_NTP_bind@2759|LN-14, OB_NTP_bind@33090|aJ-18, OB_NTP_bind@3398|sf-21, dsrm@131567|A-1, dsrm@2759|JT-13, dsrm@3398|CCW-28
Gene Ontology
GO:0000228 nuclear chromosome; GO:0000287 magnesium ion binding; GO:0000380 alternative mRNA splicing, via spliceosome; GO:0000781 chromosome, telomeric region; GO:0000785 chromatin; GO:0000805 X chromosome; GO:0000963 mitochondrial RNA processing; GO:0000976 transcription cis-regulatory region binding; GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000993 RNA polymerase II complex binding; GO:0001069 regulatory region RNA binding; GO:0001503 ossification; GO:0001649 osteoblast differentiation; GO:0002151 G-quadruplex RNA binding; GO:0002183 cytoplasmic translational initiation; GO:0002735 positive regulation of myeloid dendritic cell cytokine production; GO:0003677 DNA binding; GO:0003678 DNA helicase activity; GO:0003682 chromatin binding; GO:0003688 DNA replication origin binding; GO:0003690 double-stranded DNA binding; GO:0003697 single-stranded DNA binding; GO:0003712 transcription coregulator activity; GO:0003713 transcription coactivator activity; GO:0003723 RNA binding; GO:0003724 RNA helicase activity; GO:0003725 double-stranded RNA binding; GO:0003727 single-stranded RNA binding; GO:0003729 mRNA binding; GO:0003730 mRNA 3'-UTR binding; GO:0004386 helicase activity; GO:0005515 protein binding; GO:0005524 ATP binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005694 chromosome; GO:0005726 perichromatin fibrils; GO:0005730 nucleolus; GO:0005737 cytoplasm; GO:0005739 mitochondrion; GO:0005813 centrosome; GO:0005829 cytosol; GO:0006139 nucleobase-containing compound metabolic process; GO:0006259 DNA metabolic process; GO:0006325 chromatin organization; GO:0006357 regulation of transcription by RNA polymerase II; GO:0006359 regulation of transcription by RNA polymerase III; GO:0007281 germ cell development; GO:0007283 spermatogenesis; GO:0007417 central nervous system development; GO:0007623 circadian rhythm; GO:0008094 ATP-dependent activity, acting on DNA; GO:0008150 biological_process; GO:0008340 determination of adult lifespan; GO:0009047 dosage compensation by hyperactivation of X chromosome; GO:0009615 response to virus; GO:0010494 cytoplasmic stress granule; GO:0010628 positive regulation of gene expression; GO:0015629 actin cytoskeleton; GO:0016020 membrane; GO:0016442 RISC complex; GO:0016456 X chromosome located dosage compensation complex, transcription activating; GO:0016554 cytidine to uridine editing; GO:0016556 mRNA modification; GO:0016604 nuclear body; GO:0016607 nuclear speck; GO:0016887 ATP hydrolysis activity; GO:0017111 ribonucleoside triphosphate phosphatase activity; GO:0017148 negative regulation of translation; GO:0020023 kinetoplast; GO:0030424 axon; GO:0030425 dendrite; GO:0031019 mitochondrial mRNA editing complex; GO:0031442 positive regulation of mRNA 3'-end processing; GO:0031453 positive regulation of heterochromatin formation; GO:0031490 chromatin DNA binding; GO:0031981 nuclear lumen; GO:0032206 positive regulation of telomere maintenance; GO:0032727 positive regulation of interferon-alpha production; GO:0032728 positive regulation of interferon-beta production; GO:0032741 positive regulation of interleukin-18 production; GO:0032755 positive regulation of interleukin-6 production; GO:0032760 positive regulation of tumor necrosis factor production; GO:0032991 protein-containing complex; GO:0033679 3'-5' DNA/RNA helicase activity; GO:0034458 3'-5' RNA helicase activity; GO:0034605 cellular response to heat; GO:0034644 cellular response to UV; GO:0035195 miRNA-mediated post-transcriptional gene silencing; GO:0035197 siRNA binding; GO:0035613 RNA stem-loop binding; GO:0035925 mRNA 3'-UTR AU-rich region binding; GO:0036464 cytoplasmic ribonucleoprotein granule; GO:0039695 DNA-templated viral transcription; GO:0042645 mitochondrial nucleoid; GO:0042714 dosage compensation complex assembly; GO:0042826 histone deacetylase binding; GO:0043022 ribosome binding; GO:0043024 ribosomal small subunit binding; GO:0043123 positive regulation of canonical NF-kappaB signal transduction; GO:0043138 3'-5' DNA helicase activity; GO:0043204 perikaryon; GO:0043330 response to exogenous dsRNA; GO:0043488 regulation of mRNA stability; GO:0045089 positive regulation of innate immune response; GO:0045142 triplex DNA binding; GO:0045433 male courtship behavior, veined wing generated song production; GO:0045739 positive regulation of DNA repair; GO:0045740 positive regulation of DNA replication; GO:0045814 negative regulation of gene expression, epigenetic; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0045995 regulation of embryonic development; GO:0046833 positive regulation of RNA export from nucleus; GO:0047429 nucleoside triphosphate diphosphatase activity; GO:0048027 mRNA 5'-UTR binding; GO:0048146 positive regulation of fibroblast proliferation; GO:0048255 mRNA stabilization; GO:0048675 axon extension; GO:0050434 positive regulation of viral transcription; GO:0050684 regulation of mRNA processing; GO:0050691 regulation of defense response to virus by host; GO:0050729 positive regulation of inflammatory response; GO:0051880 G-quadruplex DNA binding; GO:0051891 positive regulation of cardioblast differentiation; GO:0060261 positive regulation of transcription initiation by RNA polymerase II; GO:0060760 positive regulation of response to cytokine stimulus; GO:0061003 positive regulation of dendritic spine morphogenesis; GO:0061158 3'-UTR-mediated mRNA destabilization; GO:0061629 RNA polymerase II-specific DNA-binding transcription factor binding; GO:0061676 importin-alpha family protein binding; GO:0065003 protein-containing complex assembly; GO:0070034 telomerase RNA binding; GO:0070062 extracellular exosome; GO:0070063 RNA polymerase binding; GO:0070269 pyroptotic inflammatory response; GO:0070578 RISC-loading complex; GO:0070883 pre-miRNA binding; GO:0070922 RISC complex assembly; GO:0070934 CRD-mediated mRNA stabilization; GO:0070937 CRD-mediated mRNA stability complex; GO:0071360 cellular response to exogenous dsRNA; GO:0072487 MSL complex; GO:0090669 telomerase RNA stabilization; GO:0097014 ciliary plasm; GO:0097165 nuclear stress granule; GO:0106222 lncRNA binding; GO:0140640 catalytic activity, acting on a nucleic acid; GO:0160225 G-quadruplex unwinding activity; GO:1900152 negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay; GO:1900153 positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay; GO:1901534 positive regulation of hematopoietic progenitor cell differentiation; GO:1903608 protein localization to cytoplasmic stress granule; GO:1903843 cellular response to arsenite ion; GO:1904358 positive regulation of telomere maintenance via telomere lengthening; GO:1904582 positive regulation of intracellular mRNA localization; GO:1905172 RISC complex binding; GO:1990518 single-stranded 3'-5' DNA helicase activity; GO:1990825 sequence-specific mRNA binding; GO:1990841 promoter-specific chromatin binding; GO:1990904 ribonucleoprotein complex; GO:2000765 regulation of cytoplasmic translation; GO:2000767 positive regulation of cytoplasmic translation
KEGG
EC: ec:5.6.2.6 | KO: K14442 | Pathway: 03018 | BRITE: 00001, 01000, 03012, 03019
Biological context

Connected feature records

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