Hass · gene

PaHa07g22480

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

2,157
bp
7:66,020,021–66,031,085
genomic location
Record overview

Feature identity

Identifier
PaHa07g22480
Feature type
gene
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
2,157 bp
Genomic location
7:66,020,021–66,031,085
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC104612273 | Seed ortholog: 337451.A0A3S3N2W3 | COG: S | eggNOG OG: AAA_33@131567|F-3, SPRY@131567|B-2, SPRY@2759|AP-7
Gene Ontology
GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000228 nuclear chromosome; GO:0000380 alternative mRNA splicing, via spliceosome; GO:0000381 regulation of alternative mRNA splicing, via spliceosome; GO:0000398 mRNA splicing, via spliceosome; GO:0000776 kinetochore; GO:0000785 chromatin; GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000993 RNA polymerase II complex binding; GO:0001097 TFIIH-class transcription factor complex binding; GO:0001649 osteoblast differentiation; GO:0003674 molecular_function; GO:0003677 DNA binding; GO:0003682 chromatin binding; GO:0003690 double-stranded DNA binding; GO:0003697 single-stranded DNA binding; GO:0003714 transcription corepressor activity; GO:0003723 RNA binding; GO:0003725 double-stranded RNA binding; GO:0003727 single-stranded RNA binding; GO:0003730 mRNA 3'-UTR binding; GO:0003779 actin binding; GO:0005515 protein binding; GO:0005524 ATP binding; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005694 chromosome; GO:0005697 telomerase holoenzyme complex; GO:0005737 cytoplasm; GO:0005813 centrosome; GO:0005829 cytosol; GO:0006325 chromatin organization; GO:0006396 RNA processing; GO:0007346 regulation of mitotic cell cycle; GO:0008143 poly(A) binding; GO:0008150 biological_process; GO:0009048 dosage compensation by inactivation of X chromosome; GO:0009615 response to virus; GO:0009986 cell surface; GO:0010628 positive regulation of gene expression; GO:0016020 membrane; GO:0016071 mRNA metabolic process; GO:0016363 nuclear matrix; GO:0016607 nuclear speck; GO:0017069 snRNA binding; GO:0017130 poly(C) RNA binding; GO:0019899 enzyme binding; GO:0030218 erythrocyte differentiation; GO:0030496 midbody; GO:0031048 regulatory ncRNA-mediated heterochromatin formation; GO:0031490 chromatin DNA binding; GO:0031509 subtelomeric heterochromatin formation; GO:0032211 negative regulation of telomere maintenance via telomerase; GO:0032922 circadian regulation of gene expression; GO:0032991 protein-containing complex; GO:0033339 pectoral fin development; GO:0033673 negative regulation of kinase activity; GO:0034046 poly(G) binding; GO:0034244 negative regulation of transcription elongation by RNA polymerase II; GO:0034584 piRNA binding; GO:0035989 tendon development; GO:0036002 pre-mRNA binding; GO:0036464 cytoplasmic ribonucleoprotein granule; GO:0042802 identical protein binding; GO:0043021 ribonucleoprotein complex binding; GO:0043565 sequence-specific DNA binding; GO:0044877 protein-containing complex binding; GO:0045202 synapse; GO:0045814 negative regulation of gene expression, epigenetic; GO:0045815 transcription initiation-coupled chromatin remodeling; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0048188 Set1C/COMPASS complex; GO:0048189 Lid2 complex; GO:0048255 mRNA stabilization; GO:0051457 maintenance of protein location in nucleus; GO:0055013 cardiac muscle cell development; GO:0060816 random inactivation of X chromosome; GO:0070034 telomerase RNA binding; GO:0070934 CRD-mediated mRNA stabilization; GO:0070937 CRD-mediated mRNA stability complex; GO:0071011 precatalytic spliceosome; GO:0071013 catalytic step 2 spliceosome; GO:0071385 cellular response to glucocorticoid stimulus; GO:0071549 cellular response to dexamethasone stimulus; GO:0072686 mitotic spindle; GO:0090336 positive regulation of brown fat cell differentiation; GO:0090575 RNA polymerase II transcription regulator complex; GO:0098577 inactive sex chromosome; GO:0098963 dendritic transport of messenger ribonucleoprotein complex; GO:0099122 RNA polymerase II C-terminal domain binding; GO:0106222 lncRNA binding; GO:1900152 negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay; GO:1901673 regulation of mitotic spindle assembly; GO:1902275 regulation of chromatin organization; GO:1902425 positive regulation of attachment of mitotic spindle microtubules to kinetochore; GO:1902889 protein localization to spindle microtubule; GO:1990023 mitotic spindle midzone; GO:1990280 RNA localization to chromatin; GO:1990498 mitotic spindle microtubule; GO:1990830 cellular response to leukemia inhibitory factor; GO:1990837 sequence-specific double-stranded DNA binding; GO:1990841 promoter-specific chromatin binding; GO:1990845 adaptive thermogenesis; GO:1990904 ribonucleoprotein complex; GO:2000373 positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity; GO:2000648 positive regulation of stem cell proliferation; GO:2000737 negative regulation of stem cell differentiation; GO:2000767 positive regulation of cytoplasmic translation
KEGG
EC: ec:2.3.2.27 | KO: K15047 | Pathway: 03040, 05164 | BRITE: 00001
Biological context

Connected feature records

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