PaHa03g16840.1

Hass · mRNA

PaHa03g16840.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

360
bp
3:53,645,977–53,650,465
genomic location
Record overview

Feature identity

Identifier
PaHa03g16840.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
360 bp
Genomic location
3:53,645,977–53,650,465
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

Functional index matched identifier: PaHa03g16840

eggNOG
Preferred name: BnaC09g52640D | Seed ortholog: 51351.M4F2B1 | COG: COG0584 | eggNOG OG: GDPD@131567|GT-13, GDPD@3398|AKH-22, GDPD@3700|DSr-30, GDPD@3705|Gus-35, Mpo1-like@131567|C-2, Mpo1-like@1437183|as-20, Mpo1-like@3193|Hr-13, Mpo1-like@3700|AJQ-26, Mpo1-like@91836|uv-24
Gene Ontology
GO:0001561 fatty acid alpha-oxidation; GO:0005886 plasma membrane; GO:0008150 biological_process; GO:0008889 glycerophosphodiester phosphodiesterase activity; GO:0009506 plasmodesma; GO:0009536 plastid; GO:0016020 membrane; GO:0046521 sphingoid catabolic process; GO:0099503 secretory vesicle
KEGG
EC: ec:1.14.18.12, ec:3.1.4.46, ec:3.4.11.26 | KO: K18573, K18696, K24121 | Pathway: 00564 | BRITE: 00001, 01000, 01002
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa03g16840.1-CDS-3-1787993825:53645977..53646084
part_of
CDSPaHa03g16840.1-CDS-3-1787993825:53646346..53646511
part_of
CDSPaHa03g16840.1-CDS-3-1787993825:53650380..53650465
part_of
exonPaHa03g16840.1-exon-3-1787993825:53645977..53646084
part_of
exonPaHa03g16840.1-exon-3-1787993825:53646346..53646511
part_of
exonPaHa03g16840.1-exon-3-1787993825:53650380..53650465
part_of
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