Hass · gene

PaHa06g04850

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

1,365
bp
6:6,797,930–6,807,342
genomic location
Record overview

Feature identity

Identifier
PaHa06g04850
Feature type
gene
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
1,365 bp
Genomic location
6:6,797,930–6,807,342
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC104596003 | Seed ortholog: 337451.A0A3S3MZS6 | eggNOG OG: EGF@131567|VR-14
Gene Ontology
GO:0001530 lipopolysaccharide binding; GO:0001736 establishment of planar polarity; GO:0001737 establishment of imaginal disc-derived wing hair orientation; GO:0001738 morphogenesis of a polarized epithelium; GO:0001764 neuron migration; GO:0001843 neural tube closure; GO:0001894 tissue homeostasis; GO:0001932 regulation of protein phosphorylation; GO:0001942 hair follicle development; GO:0002092 positive regulation of receptor internalization; GO:0002523 leukocyte migration involved in inflammatory response; GO:0002687 positive regulation of leukocyte migration; GO:0002691 regulation of cellular extravasation; GO:0003341 cilium movement; GO:0004888 transmembrane signaling receptor activity; GO:0004930 G protein-coupled receptor activity; GO:0005178 integrin binding; GO:0005509 calcium ion binding; GO:0005515 protein binding; GO:0005576 extracellular region; GO:0005654 nucleoplasm; GO:0005737 cytoplasm; GO:0005886 plasma membrane; GO:0005901 caveola; GO:0005905 clathrin-coated pit; GO:0005911 cell-cell junction; GO:0006355 regulation of DNA-templated transcription; GO:0006954 inflammatory response; GO:0007155 cell adhesion; GO:0007156 homophilic cell-cell adhesion; GO:0007157 heterophilic cell-cell adhesion; GO:0007159 leukocyte cell-cell adhesion; GO:0007186 G protein-coupled receptor signaling pathway; GO:0007200 phospholipase C-activating G protein-coupled receptor signaling pathway; GO:0007266 Rho protein signal transduction; GO:0007367 segment polarity determination; GO:0007409 axonogenesis; GO:0007411 axon guidance; GO:0007413 axonal fasciculation; GO:0007417 central nervous system development; GO:0007507 heart development; GO:0007626 locomotory behavior; GO:0008104 intracellular protein localization; GO:0008150 biological_process; GO:0008201 heparin binding; GO:0009897 external side of plasma membrane; GO:0009952 anterior/posterior pattern specification; GO:0010572 positive regulation of platelet activation; GO:0016020 membrane; GO:0016055 Wnt signaling pathway; GO:0016318 ommatidial rotation; GO:0016319 mushroom body development; GO:0016324 apical plasma membrane; GO:0016339 calcium-dependent cell-cell adhesion; GO:0016358 dendrite development; GO:0019722 calcium-mediated signaling; GO:0019827 stem cell population maintenance; GO:0021591 ventricular system development; GO:0021754 facial nucleus development; GO:0021915 neural tube development; GO:0021999 neural plate anterior/posterior regionalization; GO:0022407 regulation of cell-cell adhesion; GO:0030029 actin filament-based process; GO:0030097 hemopoiesis; GO:0030424 axon; GO:0030863 cortical cytoskeleton; GO:0031092 platelet alpha granule membrane; GO:0032496 response to lipopolysaccharide; GO:0032880 regulation of protein localization; GO:0032956 regulation of actin cytoskeleton organization; GO:0033326 cerebrospinal fluid secretion; GO:0033564 anterior/posterior axon guidance; GO:0033623 regulation of integrin activation; GO:0033691 sialic acid binding; GO:0034097 response to cytokine; GO:0034612 response to tumor necrosis factor; GO:0035159 regulation of tube length, open tracheal system; GO:0035701 hematopoietic stem cell migration; GO:0036514 dopaminergic neuron axon guidance; GO:0036515 serotonergic neuron axon guidance; GO:0038023 signaling receptor activity; GO:0042060 wound healing; GO:0042067 establishment of ommatidial planar polarity; GO:0042074 cell migration involved in gastrulation; GO:0042249 establishment of planar polarity of embryonic epithelium; GO:0042472 inner ear morphogenesis; GO:0042806 fucose binding; GO:0043274 phospholipase binding; GO:0045121 membrane raft; GO:0045176 apical protein localization; GO:0045773 positive regulation of axon extension; GO:0045785 positive regulation of cell adhesion; GO:0048057 R3/R4 development; GO:0048105 establishment of body hair planar orientation; GO:0048306 calcium-dependent protein binding; GO:0048471 perinuclear region of cytoplasm; GO:0048787 presynaptic active zone membrane; GO:0048813 dendrite morphogenesis; GO:0050727 regulation of inflammatory response; GO:0050770 regulation of axonogenesis; GO:0050839 cell adhesion molecule binding; GO:0050900 leukocyte migration; GO:0050901 leukocyte tethering or rolling; GO:0051897 positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction; GO:0051963 regulation of synapse assembly; GO:0055113 epiboly involved in gastrulation with mouth forming second; GO:0060071 Wnt signaling pathway, planar cell polarity pathway; GO:0060271 cilium assembly; GO:0060488 orthogonal dichotomous subdivision of terminal units involved in lung branching morphogenesis; GO:0060489 planar dichotomous subdivision of terminal units involved in lung branching morphogenesis; GO:0060490 lateral sprouting involved in lung morphogenesis; GO:0070492 oligosaccharide binding; GO:0070555 response to interleukin-1; GO:0070593 dendrite self-avoidance; GO:0071354 cellular response to interleukin-6; GO:0090251 protein localization involved in establishment of planar polarity; GO:0097241 hematopoietic stem cell migration to bone marrow; GO:0097376 interneuron axon guidance; GO:0098609 cell-cell adhesion; GO:0098839 postsynaptic density membrane; GO:0098978 glutamatergic synapse; GO:1902669 positive regulation of axon guidance; GO:1903238 positive regulation of leukocyte tethering or rolling
KEGG
KO: K04600, K04601, K04602, K06494, K06495, K06496, K16669, K16690, K24332 | Pathway: 04013, 04391, 04514, 04613, 04668, 04933, 05143, 05144, 05150, 05171, 05417, 05418 | BRITE: 00001, 00536, 01002, 04030, 04090, 04091, 04515, 04990
Biological context

Connected feature records

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