PaHa03g10030.1

Hass · mRNA

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

4,284: bp
3:19,893,946–19,939,841: genomic location

Record overview

Feature identity

Identifier: PaHa03g10030.1
Feature type: mRNA
Genome collection: Hass
Organism: Persea americana-Hass
Sequence length: 4,284 bp
Genomic location: 3:19,893,946–19,939,841
Strand: +

Open original Tripal record

Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

Functional index matched identifier: PaHa03g10030

eggNOG: Preferred name: LOC110785004 | Seed ortholog: 337451.A0A3S3NAW1 | COG: COG0553 | eggNOG OG: HIRAN@131567|KZ-16, Helicase_C|7YVK5T@131567, Helicase_C|7YVK5T@2759, SNF2-rel_dom@131567|Ce-9!, SNF2-rel_dom@2759|DXw-28, zf-C3HC4@131567|d-5, zf-C3HC4@2759|Hs-12
Gene Ontology: GO:0000113 nucleotide-excision repair factor 4 complex; GO:0000209 protein polyubiquitination; GO:0000785 chromatin; GO:0003677 DNA binding; GO:0003690 double-stranded DNA binding; GO:0003697 single-stranded DNA binding; GO:0003723 RNA binding; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005694 chromosome; GO:0005886 plasma membrane; GO:0006281 DNA repair; GO:0006974 DNA damage response; GO:0008094 ATP-dependent activity, acting on DNA; GO:0009941 chloroplast envelope; GO:0015616 DNA translocase activity; GO:0016020 membrane; GO:0016363 nuclear matrix; GO:0016567 protein ubiquitination; GO:0016887 ATP hydrolysis activity; GO:0019985 translesion synthesis; GO:0031625 ubiquitin protein ligase binding; GO:0042275 error-free postreplication DNA repair; GO:0042789 mRNA transcription by RNA polymerase II; GO:0043596 nuclear replication fork; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0050767 regulation of neurogenesis; GO:0061630 ubiquitin protein ligase activity; GO:0062072 histone H3K9me2/3 reader activity; GO:0070534 protein K63-linked ubiquitination; GO:0071168 protein localization to chromatin; GO:0071932 replication fork reversal; GO:0090575 RNA polymerase II transcription regulator complex; GO:0140234 histone H3K23 ubiquitin ligase activity; GO:0140658 ATP-dependent chromatin remodeler activity; GO:0141119 chromosomal DNA methylation maintenance following DNA replication; GO:0160225 G-quadruplex unwinding activity
KEGG: EC: ec:2.3.2.27 | KO: K15711 | Pathway: 04141 | BRITE: 00001, 01000, 03400, 04121

Biological context