Hass · gene

PaHa04g17780

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

2,607
bp
4:49,600,355–49,623,503
genomic location
Record overview

Feature identity

Identifier
PaHa04g17780
Feature type
gene
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
2,607 bp
Genomic location
4:49,600,355–49,623,503
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: MAH20.19 | Seed ortholog: 337451.A0A3S3PGY1 | COG: S | eggNOG OG: DDT@131567|U-5, WAC_Acf1_DNA_bd@2759|A-1, WHIM1@131567|C-2, WHIM1@2759|BK-8, WSD@131567|A-1*, WSD@2759|BF-8!
Gene Ontology
GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000183 rDNA heterochromatin formation; GO:0000228 nuclear chromosome; GO:0000785 chromatin; GO:0000793 condensed chromosome; GO:0000976 transcription cis-regulatory region binding; GO:0001164 RNA polymerase I core promoter sequence-specific DNA binding; GO:0001671 ATPase activator activity; GO:0003674 molecular_function; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0003723 RNA binding; GO:0004713 protein tyrosine kinase activity; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005677 chromatin silencing complex; GO:0005694 chromosome; GO:0005700 polytene chromosome; GO:0005721 pericentric heterochromatin; GO:0005730 nucleolus; GO:0005829 cytosol; GO:0006261 DNA-templated DNA replication; GO:0006275 regulation of DNA replication; GO:0006325 chromatin organization; GO:0006334 nucleosome assembly; GO:0006335 DNA replication-dependent chromatin assembly; GO:0006338 chromatin remodeling; GO:0006346 DNA methylation-dependent constitutive heterochromatin formation; GO:0006351 DNA-templated transcription; GO:0006355 regulation of DNA-templated transcription; GO:0006357 regulation of transcription by RNA polymerase II; GO:0006974 DNA damage response; GO:0007399 nervous system development; GO:0008150 biological_process; GO:0008270 zinc ion binding; GO:0008623 CHRAC; GO:0010172 embryonic body morphogenesis; GO:0010228 vegetative to reproductive phase transition of meristem; GO:0016479 negative regulation of transcription by RNA polymerase I; GO:0016590 ACF complex; GO:0016607 nuclear speck; GO:0016922 nuclear receptor binding; GO:0031010 ISWI-type complex; GO:0031445 regulation of heterochromatin formation; GO:0031507 heterochromatin formation; GO:0031509 subtelomeric heterochromatin formation; GO:0031555 transcriptional attenuation; GO:0033553 rDNA heterochromatin; GO:0036268 swimming; GO:0040029 epigenetic regulation of gene expression; GO:0042393 histone binding; GO:0043596 nuclear replication fork; GO:0043687 post-translational protein modification; GO:0045740 positive regulation of DNA replication; GO:0045892 negative regulation of DNA-templated transcription; GO:0045893 positive regulation of DNA-templated transcription; GO:0045943 positive regulation of transcription by RNA polymerase I; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0045945 positive regulation of transcription by RNA polymerase III; GO:0048510 regulation of timing of transition from vegetative to reproductive phase; GO:0060590 ATPase regulator activity; GO:0071444 cellular response to pheromone; GO:0090535 WICH complex; GO:0090536 NoRC complex; GO:0110016 B-WICH complex; GO:0140046 histone H4K16ac reader activity; GO:0140297 DNA-binding transcription factor binding; GO:0140463 chromatin-protein adaptor activity; GO:0140801 histone H2AXY142 kinase activity; GO:1904949 ATPase complex; GO:1905213 negative regulation of mitotic chromosome condensation; GO:2001208 negative regulation of transcription elongation by RNA polymerase I
KEGG
EC: ec:2.3.1.48 | KO: K11655, K11658, K15224, K22768, K26167 | Pathway: 03082 | BRITE: 00001, 01000, 03021, 03036
Biological context

Connected feature records

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