Functional Annotation Search

Functional discovery

Search genes by biological annotation

Search integrated eggNOG, Gene Ontology, and KEGG evidence with phrases such as fatty acid, lipid metabolism, kinase, or transcription factor.

33,382: Hass annotations
3+: indexed evidence types

Matches

2,418 genes for “transcription factor”

Select useful genes and continue directly to GO enrichment or batch sequence export.

Search identifiers instead

Select	Gene	Matched annotation	Evidence	Actions
Select PaHa06g01360	PaHa06g01360`PaHa06g01360.1`	…A polymerase II \| endothelial tube morphogenesis \| RNA polymerase II-specific DNA-binding transcription factor binding \| protein-containing complex assembly \| extracellular exosome \| cellular response to xenobiotic stimulus \| symbiont-mediated disruption of host cell PML body \| ciliary plasm \| liver… Show annotation evidence eggNOG Preferred name: CKB1 \| Seed ortholog: 337451.A0A443PG43 \| COG: S \| eggNOG OG: CK_II_beta@131567\|A-1*, CK_II_beta@2759\|O-5 GO GO:0000028 ribosomal small subunit assembly; GO:0000785 chromatin; GO:0001650 fibrillar center; GO:0003674 molecular_function; GO:0003682 chromatin binding; GO:0004674 protein serine/threonine kinase activity; GO:0005102 signaling receptor binding; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005576 extracellular region; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005737 cytoplasm; GO:0005829... KEGG KO: K03115 \| Pathway: 03008, 03083, 04712 \| BRITE: 00001, 03009, 03036	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa06g01660	PaHa06g01660`PaHa06g01660.1`	…nsed chromosome \| transcription cis-regulatory region binding \| DNA binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| nucleolus \| cytosol \| regulation of DNA-templated transcription \| negative regulation of cell population proliferation \| asymmetric cell division \| re… Show annotation evidence eggNOG Preferred name: MYB39 \| Seed ortholog: 337451.A0A443PG05 \| COG: S \| eggNOG OG: Myb_DNA-binding@131567\|AOS-27, Myb_DNA-binding@3193\|HJd-40, Myb_DNA-binding@33090\|FSl-38, Myb_DNA-binding@35493\|GNw-39, Myb_DNA-binding@58023\|YIl-54 GO GO:0000793 condensed chromosome; GO:0000976 transcription cis-regulatory region binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005730 nucleolus; GO:0005829 cytosol; GO:0006355 regulation of DNA-templated transcription; GO:0008285 negative regulation of cell population proliferation; GO:0008356 asymmetric cell division; GO... KEGG KO: K09422 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa06g01710	PaHa06g01710`PaHa06g01710.1`	…O:0003677 \| GO:0003700 \| GO:0005515 \| GO:0005634 \| GO:0009408 \| DNA binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| response to heat Show annotation evidence eggNOG Preferred name: HSFA1 \| Seed ortholog: 337451.A0A3S3MV96 \| COG: S \| eggNOG OG: HSF_DNA-bind@131567\|Dp-10, HSF_DNA-bind@3193\|AWd-23, HSF_DNA-bind@33090\|fZ-18, HSF_DNA-bind@3398\|BEb-26, HSF_DNA-bind@35493\|uY-20 GO GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0009408 response to heat KEGG KO: K09419 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa06g02280	PaHa06g02280`PaHa06g02280.1`	PaHa06g02280 \| PaHa06g02280.1 \| GLR26 \| 337451.A0A3S3NZ61 \| ANF_receptor@131567\|Gc-16 \| ANF_receptor@1437183\|EJw-43 \| ANF_receptor@3193\|Cri-40 \| Lig_chan@131567\|DM-12 \| Lig_chan@1437183\|AHc-26! \| Lig_chan@3193\|hl-22 \| Lig_chan@3398\|nF-23 \| SBP_bac_3@131567... Show annotation evidence eggNOG Preferred name: GLR26 \| Seed ortholog: 337451.A0A3S3NZ61 \| COG: S \| eggNOG OG: ANF_receptor@131567\|Gc-16, ANF_receptor@1437183\|EJw-43, ANF_receptor@3193\|Cri-40, Lig_chan@131567\|DM-12, Lig_chan@1437183\|AHc-26!, Lig_chan@3193\|hl-22, Lig_chan@3398\|nF-23, SBP_bac_3@131567\|C-2!, SBP_bac_3@1437183\|Awq-30, SBP_bac_3@3193\|AIr-27 GO GO:0000149 SNARE binding; GO:0001540 amyloid-beta binding; GO:0001640 adenylate cyclase inhibiting G protein-coupled glutamate receptor activity; GO:0001661 conditioned taste aversion; GO:0001662 behavioral fear response; GO:0001666 response to hypoxia; GO:0001919 regulation of receptor recycling; GO:0001964 startle response; GO:0001965 G-protein alpha-subunit binding; GO:0001966 thigmotaxis; GO:0001967 suckling... KEGG KO: K05387 \| Pathway: 04014, 04015, 04020, 04024, 04080, 04713, 04720, 04723, 04724, 04728, 04730, 05010, 05014, 05016, 05017, 05020, 05022, 05030, 05031, 05033, 05034, 05202, 05322 \| BRITE: 00001, 04040	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa06g02390	PaHa06g02390`PaHa06g02390.1`	…010 \| GO:0048825 \| GO:0090451 \| transcription cis-regulatory region binding \| DNA-binding transcription factor activity \| nucleus \| cytoplasm \| positive regulation of cell population proliferation \| embryo development ending in seed dormancy \| regulation of meristem growth \| establishment of cell po… Show annotation evidence eggNOG Preferred name: WOX9 \| Seed ortholog: 337451.A0A443PFV9 \| COG: S \| eggNOG OG: Homeodomain@131567\|RH-16, Homeodomain@2759\|XV-17!, Homeodomain@33090\|AkS-22, Homeodomain@3398\|BaY-24 GO GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0008284 positive regulation of cell population proliferation; GO:0009793 embryo development ending in seed dormancy; GO:0010075 regulation of meristem growth; GO:0030010 establishment of cell polarity; GO:0048825 cotyledon development; GO:0090451 cotyledon... KEGG KO: K09299, K09357, K09378, K09379, K09380, K23560 \| Pathway: 04550, 05202, 05206, 05215 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa06g02400	PaHa06g02400`PaHa06g02400.1`	…is-regulatory region binding \| DNA-binding transcription repressor activity \| DNA-binding transcription factor activity \| protein binding \| nucleus \| mitochondrion \| regulation of DNA-templated transcription \| response to abscisic acid \| cellular response to phosphate starvation \| sequence-specific … Show annotation evidence eggNOG Preferred name: HHO3 \| Seed ortholog: 337451.A0A3S3ML99 \| COG: S \| eggNOG OG: Myb_DNA-binding@33090\|B-2!, Myb_DNA-binding@35493\|AI-8 GO GO:0000976 transcription cis-regulatory region binding; GO:0001217 DNA-binding transcription repressor activity; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005739 mitochondrion; GO:0006355 regulation of DNA-templated transcription; GO:0009737 response to abscisic acid; GO:0016036 cellular response to phosphate starvation; GO:0043565 sequence-specific...	eggNOGGO eggNOG-inferred	Record JBrowse Workspace
Select PaHa06g02510	PaHa06g02510`PaHa06g02510.1`	…77 \| GO:1902584 \| transcription cis-regulatory region binding \| DNA binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| regulation of DNA-templated transcription \| response to auxin \| auxin metabolic process \| vegetative phase change \| abaxial cell fate specification \| … Show annotation evidence eggNOG Preferred name: LOC104599494 \| Seed ortholog: 337451.A0A443PFU2 \| COG: S \| eggNOG OG: Auxin_resp@131567\|A-1, Auxin_resp@2759\|B-2, Auxin_resp@3398\|Cm-12, B3@131221\|yd-19, B3@131567\|A-1, B3@3193\|AHu-20, B3@33090\|Id-12, B3@3398\|BCh-24 GO GO:0000976 transcription cis-regulatory region binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009733 response to auxin; GO:0009850 auxin metabolic process; GO:0010050 vegetative phase change; GO:0010158 abaxial cell fate specification; GO:0010582 floral meristem... KEGG KO: K14486 \| Pathway: 04075 \| BRITE: 00001	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa06g02570	PaHa06g02570`PaHa06g02570.1`	… \| protein-cysteine methyltransferase activity \| histone H4 reader activity \| DNA-binding transcription factor binding \| histone reader activity \| ATP-dependent chromatin remodeler activity \| ATP-dependent H3-H4 histone complex chaperone activity \| transcription elongation-coupled chromatin remodeli… Show annotation evidence eggNOG Preferred name: 25487297 \| Seed ortholog: 337451.A0A443PFR3 \| COG: S \| eggNOG OG: AAA@131567\|Afu-19, AAA@2759\|EPl-25, AAA_lid_3@131567\|BL-8, zf-HC5HC2H@131567\|A-1*, zf-HC5HC2H@2759\|e-5! GO GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000775 chromosome, centromeric region; GO:0000785 chromatin; GO:0000976 transcription cis-regulatory region binding; GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific; GO:0001555 oocyte growth; GO:0001701 in utero embryonic development; GO:0003674 molecular_function; GO:0003677 DNA binding; GO:0003680 minor... KEGG EC: ec:2.1.1.354 \| KO: K22531 \| Pathway: 00310, 01100, 03082, 04934, 05202 \| BRITE: 00001	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa06g02620	PaHa06g02620`PaHa06g02620.1`	…364 \| GO:0048510 \| GO:0048573 \| transcription cis-regulatory region binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| regulation of DNA-templated transcription \| asymmetric cell division \| positive regulation of gibberellic acid mediated signaling pathway \| regulation… Show annotation evidence eggNOG Preferred name: MGP \| Seed ortholog: 337451.A0A443PFQ4 \| COG: S \| eggNOG OG: UNK.IYJ6@131567\|A-1*, UNK.IYJ6@3193\|y-10, UNK.IYJ6@3398\|AW-12, UNK.IYJ6@58023\|AH-11 GO GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0008356 asymmetric cell division; GO:0009939 positive regulation of gibberellic acid mediated signaling pathway; GO:0010075 regulation of meristem growth; GO:0010150 leaf senescence; GO:0019900 kinase... KEGG KO: K25870 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa06g02640	PaHa06g02640`PaHa06g02640.1`	…634 \| GO:0009637 \| GO:0009646 \| transcription cis-regulatory region binding \| DNA-binding transcription factor activity \| nucleus \| response to blue light \| response to absence of light Show annotation evidence eggNOG Preferred name: LOC104599481 \| Seed ortholog: 337451.A0A443PFS9 \| COG: S \| eggNOG OG: Homeodomain@131567\|XU-17, Homeodomain@1437183\|Has-32, Homeodomain@2759\|ACU-20! GO GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0009637 response to blue light; GO:0009646 response to absence of light KEGG KO: K08036, K09313, K09331, K09338, K09355, K09358, K09364, K15609, K15610, K15611, K15614, K15615, K19472, K19473, K19474, K24885 \| Pathway: 04113, 04148, 04927, 04934, 05202 \| BRITE: 00001, 03000, 03021	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa06g02660	PaHa06g02660`PaHa06g02660.1`	…634 \| GO:0045893 \| GO:2000652 \| transcription cis-regulatory region binding \| DNA-binding transcription factor activity \| nucleus \| positive regulation of DNA-templated transcription \| regulation of secondary cell wall biogenesis Show annotation evidence eggNOG Preferred name: NAC073 \| Seed ortholog: 337451.A0A3S3N022 \| COG: S \| eggNOG OG: NAM@131567\|A-1*, NAM@1437183\|AAl-18, NAM@3193\|HX-10, NAM@3398\|UR-13, NAM@35493\|Z-5 GO GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0045893 positive regulation of DNA-templated transcription; GO:2000652 regulation of secondary cell wall biogenesis	eggNOGGO eggNOG-inferred	Record JBrowse Workspace
Select PaHa06g02730	PaHa06g02730`PaHa06g02730.1`	…228 \| GO:0031010 \| GO:0045892 \| transcription cis-regulatory region binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| vegetative to reproductive phase transition of meristem \| ISWI-type complex \| negative regulation of DNA-templated transcription Show annotation evidence eggNOG Preferred name: LOC104599474 \| Seed ortholog: 337451.A0A443PFP3 \| COG: S \| eggNOG OG: DDT@131567\|B-2!, DDT@33090\|x-7, DDT@3398\|CF-10, HARE-HTH@131567\|A-1, HARE-HTH@3398\|Jg-14, Homeodomain@131567\|ED-11, Homeodomain@2759\|NS-15, Homeodomain@33090\|AGU-20, WHIM1@131567\|C-2, WHIM1@33090\|DO-10, WHIM1@3398\|Id-13, WSD@131567\|A-1*, WSD@33090\|P-5, WSD@3398\|Bf-9 GO GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0010228 vegetative to reproductive phase transition of meristem; GO:0031010 ISWI-type complex; GO:0045892 negative regulation of DNA-templated transcription KEGG EC: ec:2.3.1.48 \| KO: K09301, K09307, K09320, K09326, K09327, K09364, K09451, K09533, K11655, K11658, K11728, K15224, K22768, K22866, K26167 \| Pathway: 03082 \| BRITE: 00001, 01000, 03000, 03021, 03036, 03037, 03041, 03110	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa06g02740	PaHa06g02740`PaHa06g02740.1`	… \| postsynapse \| glutamatergic synapse \| sperm head-tail coupling apparatus \| DNA-binding transcription factor binding \| protein aggregate center \| cytoplasm protein quality control \| positive regulation of protein folding \| axonemal central apparatus assembly Show annotation evidence eggNOG Preferred name: ATJ2 \| Seed ortholog: 337451.A0A443PFR9 \| COG: S \| eggNOG OG: DnaJ@131567\|Cwn-23, DnaJ@2759\|MXw-33, DnaJ@3398\|cLH-43, DnaJ@35493\|YnB-41, DnaJ_C@131567\|B-2, DnaJ_C@3398\|Abm-23!, DnaJ_C@35493\|ek-18 GO GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0001534 radial spoke; GO:0001671 ATPase activator activity; GO:0002088 lens development in camera-type eye; GO:0002236 detection of misfolded protein; GO:0003341 cilium movement; GO:0003351 epithelial cilium movement involved in extracellular fluid movement; GO:0003714 transcription corepressor activity; GO:0005515 protein binding; GO:0005575... KEGG KO: K09510 \| Pathway: 04141, 05164 \| BRITE: 00001, 03110	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa06g02750	PaHa06g02750`PaHa06g02750.1`	…634 \| GO:0010638 \| GO:0045893 \| transcription cis-regulatory region binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| positive regulation of organelle organization \| positive regulation of DNA-templated transcription Show annotation evidence eggNOG Preferred name: GLK1 \| Seed ortholog: 337451.A0A3S3QU27 \| COG: S \| eggNOG OG: Myb_DNA-binding@131567\|dl-20, Myb_DNA-binding@2759\|pK-22, Myb_DNA-binding@35493\|Cse-35 GO GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0010638 positive regulation of organelle organization; GO:0045893 positive regulation of DNA-templated transcription	eggNOGGO eggNOG-inferred	Record JBrowse Workspace
Select PaHa06g03080	PaHa06g03080`PaHa06g03080.1`	…equence-specific DNA binding \| DNA-binding transcription activator activity \| DNA-binding transcription factor activity \| nucleus \| response to water deprivation \| stomatal movement \| response to nitrate \| nitrate assimilation Show annotation evidence eggNOG Preferred name: NLP7 \| Seed ortholog: 337451.A0A443PFK5 \| COG: S \| eggNOG OG: PB1@131567\|A-1*, PB1@2759\|Al-8!, PB1@3193\|km-21, PB1@3398\|sR-22, RWP-RK@131567\|Fy-13, RWP-RK@33090\|YN-24, RWP-RK@3398\|el-27 GO GO:0000976 transcription cis-regulatory region binding; GO:0000987 cis-regulatory region sequence-specific DNA binding; GO:0001046 core promoter sequence-specific DNA binding; GO:0001216 DNA-binding transcription activator activity; GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0009414 response to water deprivation; GO:0010118 stomatal movement; GO:0010167 response to nitrate; GO... KEGG KO: K13422 \| Pathway: 04016, 04075 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa06g03090	PaHa06g03090`PaHa06g03090.1`	… development \| nuclear androgen receptor binding \| RNA polymerase II-specific DNA-binding transcription factor binding \| DNA polymerase binding \| lncRNA binding \| histone H4 reader activity \| histone H3K14ac reader activity \| DNA-binding transcription factor binding \| histone reader activity \| ATP-d… Show annotation evidence eggNOG Preferred name: GRF7 \| Seed ortholog: 337451.A0A3S3MZZ8 \| COG: S \| eggNOG OG: QLQ@2759\|A-1, QLQ@3193\|K-4, QLQ@3398\|Bp-10, WRC@131221\|EO-13, WRC@131567\|A-1*, WRC@33090\|e-6, WRC@3398\|La-18 GO GO:0000182 rDNA binding; GO:0000976 transcription cis-regulatory region binding; GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding; GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0001164 RNA polymerase I core promoter sequence-specific DNA binding; GO:0001221 transcription coregulator binding; GO:0001223 transcription coactivator... KEGG KO: K11647, K11786 \| Pathway: 03082, 04714, 05225 \| BRITE: 00001, 03021, 03036	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa06g03280	PaHa06g03280`PaHa06g03280.1`	PaHa06g03280 \| PaHa06g03280.1 \| UBP10 \| 337451.A0A3S3NCM1 \| DUSP@131567\|A-1* \| DUSP@2759\|HO-18 \| DUSP@3398\|UW-29 \| UCH@131567\|Hh-17 \| UCH@2759\|AiQ-26 \| UCH@3398\|Hhs-38 \| S \| ec:3.4.19.12 \| K11366 \| K11834 \| K11835 \| K11837 \| K11838 \| K11839 \| K11844 \|... Show annotation evidence eggNOG Preferred name: UBP10 \| Seed ortholog: 337451.A0A3S3NCM1 \| COG: S \| eggNOG OG: DUSP@131567\|A-1*, DUSP@2759\|HO-18, DUSP@3398\|UW-29, UCH@131567\|Hh-17, UCH@2759\|AiQ-26, UCH@3398\|Hhs-38 GO GO:0000244 spliceosomal tri-snRNP complex assembly; GO:0001222 transcription corepressor binding; GO:0002181 cytoplasmic translation; GO:0003674 molecular_function; GO:0004197 cysteine-type endopeptidase activity; GO:0004843 cysteine-type deubiquitinase activity; GO:0005160 transforming growth factor beta receptor binding; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005829 cytosol; GO... KEGG EC: ec:3.4.19.12 \| KO: K11366, K11834, K11835, K11837, K11838, K11839, K11844, K11848, K11855, K11858, K21343 \| Pathway: 03083, 04137, 04144 \| BRITE: 00001, 01000, 01002, 03021, 03036, 04121, 04131	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa06g03640	PaHa06g03640`PaHa06g03640.1`	…355 \| GO:0009631 \| GO:0042803 \| transcription cis-regulatory region binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| cytosol \| regulation of DNA-templated transcription \| cold acclimation \| protein homodimerization activity Show annotation evidence eggNOG Preferred name: BHLH70 \| Seed ortholog: 337451.A0A3S3N735 \| COG: S \| eggNOG OG: HLH@131567\|OW-12, HLH@3193\|AAN-17, HLH@3398\|Abi-19, HLH@35493\|gX-15 GO GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005829 cytosol; GO:0006355 regulation of DNA-templated transcription; GO:0009631 cold acclimation; GO:0042803 protein homodimerization activity KEGG KO: K09092, K22495 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa06g03760	PaHa06g03760`PaHa06g03760.1`	…752 \| GO:0042754 \| GO:0048574 \| transcription cis-regulatory region binding \| DNA-binding transcription factor activity \| nucleus \| regulation of DNA-templated transcription \| circadian rhythm \| response to cold \| regulation of circadian rhythm \| negative regulation of circadian rhythm \| long-day ph… Show annotation evidence eggNOG Preferred name: LHY \| Seed ortholog: 337451.A0A3S3PFH0 \| COG: S \| eggNOG OG: Myb_DNA-binding@131567\|uI-23, Myb_DNA-binding@2759\|yY-24, Myb_DNA-binding@3398\|DIF-35 GO GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0007623 circadian rhythm; GO:0009409 response to cold; GO:0042752 regulation of circadian rhythm; GO:0042754 negative regulation of circadian rhythm; GO:0048574 long-day photoperiodism, flowering KEGG EC: ec:3.4.21.102 \| KO: K12133 \| Pathway: 04712 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa06g03810	PaHa06g03810`PaHa06g03810.1`	…GO:0006355 \| GO:0009908 \| GO:0043565 \| GO:0048366 \| GO:0048480 \| GO:1901371 \| DNA-binding transcription factor activity \| protein binding \| nucleus \| regulation of DNA-templated transcription \| flower development \| sequence-specific DNA binding \| leaf development \| stigma development \| regulation of… Show annotation evidence eggNOG Preferred name: LOC104593229 \| Seed ortholog: 337451.A0A3S3NYZ6 \| COG: S \| eggNOG OG: B3@131567\|A-1*, B3@33090\|zE-19, B3@35493\|BDn-24, B3@58023\|CfD-31 GO GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009908 flower development; GO:0043565 sequence-specific DNA binding; GO:0048366 leaf development; GO:0048480 stigma development; GO:1901371 regulation of leaf morphogenesis KEGG KO: K09287 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa06g04110	PaHa06g04110`PaHa06g04110.1`	…pair \| protein K48-linked ubiquitination \| protein K6-linked ubiquitination \| DNA-binding transcription factor binding Show annotation evidence eggNOG Preferred name: LOC109009044 \| Seed ortholog: 337451.A0A3S3QRU7 \| eggNOG OG: zf-RING_2@131567\|BRj-26 GO GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000209 protein polyubiquitination; GO:0000578 embryonic axis specification; GO:0001221 transcription coregulator binding; GO:0003677 DNA binding; GO:0003714 transcription corepressor activity; GO:0004842 ubiquitin-protein transferase activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated... KEGG EC: ec:2.3.2.27 \| KO: K19040 \| Pathway: 04310 \| BRITE: 00001, 01000, 04121	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa06g04160	PaHa06g04160`PaHa06g04160.1`	…O:0042631 \| GO:0043565 \| GO:0045892 \| GO:2000037 \| GO:2000038 \| DNA binding \| DNA-binding transcription factor activity \| nucleus \| DNA-templated transcription \| regulation of cell size \| response to water deprivation \| trichome morphogenesis \| negative regulation of cell growth \| negative regulatio… Show annotation evidence eggNOG Preferred name: LOC103708474 \| Seed ortholog: 337451.A0A3S3N709 \| eggNOG OG: Myb_DNA-bind_4@131567\|B-2, Myb_DNA-bind_4@3193\|FG-12 GO GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0006351 DNA-templated transcription; GO:0008361 regulation of cell size; GO:0009414 response to water deprivation; GO:0010090 trichome morphogenesis; GO:0030308 negative regulation of cell growth; GO:0032876 negative regulation of DNA endoreduplication; GO:0042631 cellular response to water deprivation; GO:0043565...	eggNOGGO eggNOG-inferred	Record JBrowse Workspace
Select PaHa06g04650	PaHa06g04650`PaHa06g04650.1`	…GO:0010114 \| GO:0032922 \| GO:0042752 \| GO:0043153 \| GO:2000024 \| GO:2000028 \| DNA-binding transcription factor activity \| nucleus \| circadian rhythm \| response to blue light \| regulation of photomorphogenesis \| response to red light \| circadian regulation of gene expression \| regulation of circadian… Show annotation evidence eggNOG Preferred name: ASG4 \| Seed ortholog: 337451.A0A443PFC2 \| COG: S \| eggNOG OG: Myb_DNA-binding@131567\|uI-23, Myb_DNA-binding@2759\|yY-24, Myb_DNA-binding@33090\|INd-41, Myb_DNA-binding@3398\|PWh-47 GO GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0007623 circadian rhythm; GO:0009637 response to blue light; GO:0010099 regulation of photomorphogenesis; GO:0010114 response to red light; GO:0032922 circadian regulation of gene expression; GO:0042752 regulation of circadian rhythm; GO:0043153 entrainment of circadian clock by photoperiod; GO:2000024 regulation of leaf development; GO... KEGG EC: ec:3.4.21.102 \| KO: K03797, K11314, K12133, K12134, K15127 \| Pathway: 04712 \| BRITE: 00001, 01000, 01002, 03000, 03021, 03036	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa06g04850	PaHa06g04850`PaHa06g04850.1`	PaHa06g04850 \| PaHa06g04850.1 \| LOC104596003 \| 337451.A0A3S3MZS6 \| EGF@131567\|VR-14 \| K04600 \| K04601 \| K04602 \| K06494 \| K06495 \| K06496 \| K16669 \| K16690 \| K24332 \| 04013 \| 04391 \| 04514 \| 04613 \| 04668 \| 04933 \| 05143 \| 05144 \| 05150 \| 05171 \| 05417 \|... Show annotation evidence eggNOG Preferred name: LOC104596003 \| Seed ortholog: 337451.A0A3S3MZS6 \| eggNOG OG: EGF@131567\|VR-14 GO GO:0001530 lipopolysaccharide binding; GO:0001736 establishment of planar polarity; GO:0001737 establishment of imaginal disc-derived wing hair orientation; GO:0001738 morphogenesis of a polarized epithelium; GO:0001764 neuron migration; GO:0001843 neural tube closure; GO:0001894 tissue homeostasis; GO:0001932 regulation of protein phosphorylation; GO:0001942 hair follicle development; GO:0002092 positive... KEGG KO: K04600, K04601, K04602, K06494, K06495, K06496, K16669, K16690, K24332 \| Pathway: 04013, 04391, 04514, 04613, 04668, 04933, 05143, 05144, 05150, 05171, 05417, 05418 \| BRITE: 00001, 00536, 01002, 04030, 04090, 04091, 04515, 04990	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa06g04870	PaHa06g04870`PaHa06g04870.1`	…001 \| GO:0080112 \| GO:2000652 \| transcription cis-regulatory region binding \| DNA-binding transcription factor activity \| nucleus \| xylem development \| mucilage biosynthetic process \| seed coat development \| negative regulation of DNA-templated transcription \| mucilage extrusion from seed coat \| see… Show annotation evidence eggNOG Preferred name: KNAT7 \| Seed ortholog: 337451.A0A3S3QTN3 \| COG: S \| eggNOG OG: Homeobox_KN@131567\|A-1, Homeobox_KN@2759\|B-2, Homeobox_KN@3193\|Bz-10, KNOX1@131567\|A-1, KNOX1@33090\|C-2, KNOX1@3398\|p-7, KNOX2@131567\|A-1*, KNOX2@3193\|L-4, KNOX2@35493\|C-2 GO GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0010089 xylem development; GO:0010192 mucilage biosynthetic process; GO:0010214 seed coat development; GO:0045892 negative regulation of DNA-templated transcription; GO:0080001 mucilage extrusion from seed coat; GO:0080112 seed growth; GO:2000652 regulation of secondary cell wall...	eggNOGGO eggNOG-inferred	Record JBrowse Workspace
Select PaHa06g04920	PaHa06g04920`PaHa06g04920.1`	… \| 03000 \| GRAS_305_674 \| GO:0003700 \| GO:0005634 \| GO:0005737 \| GO:0006355 \| DNA-binding transcription factor activity \| nucleus \| cytoplasm \| regulation of DNA-templated transcription Show annotation evidence eggNOG Preferred name: SCL8 \| Seed ortholog: 337451.A0A3S3PFB2 \| eggNOG OG: GRAS@131567\|n-8, GRAS@3193\|AY-10, GRAS@3398\|BI-11 GO GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0006355 regulation of DNA-templated transcription KEGG KO: K27748 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa06g04940	PaHa06g04940`PaHa06g04940.1`	…893 \| GO:0048510 \| GO:2000012 \| transcription cis-regulatory region binding \| DNA-binding transcription factor activity, RNA polymerase II-specific \| DNA-binding transcription factor activity \| protein binding \| nucleus \| cytoplasm \| response to cold \| response to gibberellin \| flower development \| … Show annotation evidence eggNOG Preferred name: SOC1 \| Seed ortholog: 4432.A0A1U8AX30 \| COG: S \| eggNOG OG: K-box@131221\|AA-6, K-box@131567\|A-1, K-box@2759\|O-4, K-box@3398\|NF-13, SRF-TF@131567\|A-1, SRF-TF@2759\|C-2!, SRF-TF@3398\|BYA-27 GO GO:0000976 transcription cis-regulatory region binding; GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0009409 response to cold; GO:0009739 response to gibberellin; GO:0009908 flower development; GO:0009911 positive regulation of flower development; GO... KEGG KO: K04378, K04454, K09260, K09261, K09262, K09264, K09265, K12412, K19807, K19808, K27808 \| Pathway: 04010, 04011, 04013, 04022, 04111, 04371, 04921, 04928, 05166, 05202, 05203, 05418 \| BRITE: 00001, 03000, 03021, 04131	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa06g04950	PaHa06g04950`PaHa06g04950.1`	…O:0048481 \| GO:0048509 \| GO:0048833 \| GO:0080060 \| GO:0080112 \| DNA binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| embryo sac development \| pollen development \| meristem determinacy \| specification of floral organ identity \| specification of carpel identity \| regul… Show annotation evidence eggNOG Preferred name: MADS6 \| Seed ortholog: 337451.A0A3S3NCE4 \| COG: S \| eggNOG OG: K-box@131567\|A-1, K-box@2759\|Ah-7, K-box@3398\|EM-10, SRF-TF@131567\|A-1, SRF-TF@2759\|C-2!, SRF-TF@3193\|jV-20, SRF-TF@3398\|BFm-26, SRF-TF@35493\|bP-19 GO GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0009553 embryo sac development; GO:0009555 pollen development; GO:0010022 meristem determinacy; GO:0010093 specification of floral organ identity; GO:0010094 specification of carpel identity; GO:0010468 regulation of gene expression; GO:0010582 floral meristem determinacy; GO:0045893... KEGG KO: K09264 \| Pathway: 04010, 04011, 04013, 04022, 04111, 04371, 04921, 04928, 05166, 05202, 05203, 05418 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa06g05030	PaHa06g05030`PaHa06g05030.1`	… \| HLH@35493\|AbE-19 \| S \| HLH_99_150 \| GO:0003700 \| GO:0005634 \| GO:0006355 \| DNA-binding transcription factor activity \| nucleus \| regulation of DNA-templated transcription Show annotation evidence eggNOG Preferred name: BHLH36 \| Seed ortholog: 337451.A0A3S3MTD7 \| COG: S \| eggNOG OG: HLH@131567\|Zg-14!, HLH@3193\|Apu-20, HLH@33090\|AAF-17, HLH@3398\|CXq-25, HLH@35493\|AbE-19 GO GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription	eggNOGGO eggNOG-inferred	Record JBrowse Workspace
Select PaHa06g05090	PaHa06g05090`PaHa06g05090.1`	…GO:0010089 \| GO:0048316 \| GO:0048364 \| GO:0051321 \| GO:0071365 \| GO:0090058 \| DNA-binding transcription factor activity \| protein binding \| nucleus \| male meiotic nuclear division \| chloroplast \| xylem development \| seed development \| root development \| meiotic cell cycle \| cellular response to auxi… Show annotation evidence eggNOG Preferred name: LHW \| Seed ortholog: 337451.A0A443PF44 \| COG: S \| eggNOG OG: bHLH-MYC_N@131567\|A-1*, bHLH-MYC_N@2759\|B-2, bHLH-MYC_N@3193\|m-7, bHLH-MYC_N@3398\|AU-9 GO GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0007140 male meiotic nuclear division; GO:0009507 chloroplast; GO:0010089 xylem development; GO:0048316 seed development; GO:0048364 root development; GO:0051321 meiotic cell cycle; GO:0071365 cellular response to auxin stimulus; GO:0090058 metaxylem development	eggNOGGO eggNOG-inferred	Record JBrowse Workspace

Functional Annotation Search

2,418 genes for “transcription factor”

Pages

Move selected genes into the next research step