Functional Annotation Search

Functional discovery

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Search integrated eggNOG, Gene Ontology, and KEGG evidence with phrases such as fatty acid, lipid metabolism, kinase, or transcription factor.

33,382: Hass annotations
3+: indexed evidence types

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2,418 genes for “transcription factor”

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Select	Gene	Matched annotation	Evidence	Actions
Select PaHa03g28460	PaHa03g28460`PaHa03g28460.1`	…\| 00001 \| 03000 \| Homeodomain_88_147 \| GO:0003700 \| GO:0005634 \| GO:0099402 \| DNA-binding transcription factor activity \| nucleus \| plant organ development Show annotation evidence eggNOG Preferred name: LOC109007483 \| Seed ortholog: 337451.A0A3S3MY44 \| COG: S \| eggNOG OG: Homeodomain@131567\|RH-16, Homeodomain@2759\|XV-17!, Homeodomain@33090\|BEn-23, Homeodomain@3398\|FYY-30 GO GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0099402 plant organ development KEGG KO: K09299, K09357, K09378, K09379, K09380, K23560 \| Pathway: 04550, 05202, 05206, 05215 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa03g28660	PaHa03g28660`PaHa03g28660.1`	…640 \| GO:0071456 \| GO:1990110 \| transcription cis-regulatory region binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| cytoplasm \| regulation of DNA-templated transcription \| response to heat \| red, far-red light phototransduction \| photomorphogenesis \| cellular respon… Show annotation evidence eggNOG Preferred name: CIGR2 \| Seed ortholog: 337451.A0A443NF93 \| COG: S \| eggNOG OG: GRAS@131567\|n-8, GRAS@3193\|AX-10, GRAS@3398\|GW-15 GO GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0006355 regulation of DNA-templated transcription; GO:0009408 response to heat; GO:0009585 red, far-red light phototransduction; GO:0009640 photomorphogenesis; GO:0071456 cellular response to hypoxia; GO:1990110 callus formation KEGG KO: K27748 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa03g28730	PaHa03g28730`PaHa03g28730.1`	PaHa03g28730 \| PaHa03g28730.1 \| LOC103707508 \| 337451.A0A443NVE3 \| FKBP_C@131567\|Oe-14 \| FKBP_C@2759\|AAG-21! \| FKBP_C@3398\|HOQ-32 \| TPR_8@131567\|Uz-14 \| TPR_8@1437183\|cUH-35 \| TPR_8@2759\|GiN-24 \| S \| ec:5.2.1.8 \| K09571 \| 00100 \| 01100 \| 01110 \| 03015 \|... Show annotation evidence eggNOG Preferred name: LOC103707508 \| Seed ortholog: 337451.A0A443NVE3 \| COG: S \| eggNOG OG: FKBP_C@131567\|Oe-14, FKBP_C@2759\|AAG-21!, FKBP_C@3398\|HOQ-32, TPR_8@131567\|Uz-14, TPR_8@1437183\|cUH-35, TPR_8@2759\|GiN-24 GO GO:0000086 G2/M transition of mitotic cell cycle; GO:0000413 protein peptidyl-prolyl isomerization; GO:0000724 double-strand break repair via homologous recombination; GO:0000747 conjugation with cellular fusion; GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific; GO:0003674 molecular_function; GO:0003723 RNA binding; GO:0003755 peptidyl-prolyl cis-trans isomerase activity; GO... KEGG EC: ec:5.2.1.8 \| KO: K09571 \| Pathway: 00100, 01100, 01110, 03015, 04915 \| Module: M00101, M00917 \| BRITE: 00001, 01000, 03110	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa03g28830	PaHa03g28830`PaHa03g28830.1`	…GO:0005515 \| GO:0005634 \| GO:0005829 \| GO:0009408 \| GO:0009414 \| GO:0045893 \| DNA-binding transcription factor activity \| protein binding \| nucleus \| cytosol \| response to heat \| response to water deprivation \| positive regulation of DNA-templated transcription Show annotation evidence eggNOG Preferred name: LOC107761037 \| Seed ortholog: 337451.A0A443NF76 \| COG: S \| eggNOG OG: CBFD_NFYB_HMF@131567\|BS-10, CBFD_NFYB_HMF@2759\|GM-15, CBFD_NFYB_HMF@33090\|Bcx-31, CBFD_NFYB_HMF@3398\|ETQ-40 GO GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005829 cytosol; GO:0009408 response to heat; GO:0009414 response to water deprivation; GO:0045893 positive regulation of DNA-templated transcription KEGG EC: ec:6.5.1.3 \| KO: K08065 \| Pathway: 04612, 05152, 05166 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa03g28970	PaHa03g28970`PaHa03g28970.1`	…60 \| GO:2000028 \| transcription cis-regulatory region binding \| DNA binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| cold acclimation \| flower development \| positive regulation of flower development \| meristem structural organization \| vernalization response \| mainte… Show annotation evidence eggNOG Preferred name: AP1 \| Seed ortholog: 337451.A0A3S3Q204 \| COG: S \| eggNOG OG: K-box@131567\|A-1, K-box@2759\|Ah-7, K-box@3398\|Cj-9, SRF-TF@131567\|A-1, SRF-TF@2759\|C-2!, SRF-TF@3193\|jV-20, SRF-TF@3398\|sl-21!, SRF-TF@35493\|bP-19 GO GO:0000976 transcription cis-regulatory region binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0009631 cold acclimation; GO:0009908 flower development; GO:0009911 positive regulation of flower development; GO:0009933 meristem structural organization; GO:0010048 vernalization response; GO:0010077 maintenance of inflorescence... KEGG KO: K09264 \| Pathway: 04010, 04011, 04013, 04022, 04111, 04371, 04921, 04928, 05166, 05202, 05203, 05418 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa03g28980	PaHa03g28980`PaHa03g28980.1`	…O:0048481 \| GO:0048833 \| GO:0080001 \| cell fate specification \| DNA binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| flower development \| specification of floral organ identity \| seed coat development \| plant ovule development \| specification of floral organ number \|… Show annotation evidence eggNOG Preferred name: SEP3 \| Seed ortholog: 337451.A0A3S4NH64 \| COG: S \| eggNOG OG: K-box@131567\|A-1, K-box@2759\|Ah-7, K-box@3398\|PR-14!, SRF-TF@131567\|A-1, SRF-TF@2759\|C-2!, SRF-TF@3193\|jV-20, SRF-TF@3398\|DMa-32, SRF-TF@35493\|bP-19 GO GO:0001708 cell fate specification; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0009908 flower development; GO:0010093 specification of floral organ identity; GO:0010214 seed coat development; GO:0048481 plant ovule development; GO:0048833 specification of floral organ number; GO:0080001 mucilage extrusion from seed coat KEGG KO: K09264 \| Pathway: 04010, 04011, 04013, 04022, 04111, 04371, 04921, 04928, 05166, 05202, 05203, 05418 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa03g29010	PaHa03g29010`PaHa03g29010.1`	…355 \| GO:0010468 \| GO:0042742 \| transcription cis-regulatory region binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| regulation of DNA-templated transcription \| regulation of gene expression \| defense response to bacterium Show annotation evidence eggNOG Preferred name: SPL6 \| Seed ortholog: 337451.A0A3S3MCB3 \| COG: S \| eggNOG OG: SBP@131567\|A-1*, SBP@3193\|S-5, SBP@33090\|I-4, SBP@58023\|EN-10 GO GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0010468 regulation of gene expression; GO:0042742 defense response to bacterium	eggNOGGO eggNOG-inferred	Record JBrowse Workspace
Select PaHa03g29020	PaHa03g29020`PaHa03g29020.1`	…366 \| GO:0048440 \| GO:0048479 \| transcription cis-regulatory region binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| regulation of DNA-templated transcription \| polarity specification of adaxial/abaxial axis \| meristem determinacy \| specification of carpel identity \|… Show annotation evidence eggNOG Preferred name: DL \| Seed ortholog: 337451.A0A3S3Q0T2 \| COG: S \| eggNOG OG: YABBY@2759\|C-2!, YABBY@3398\|d-6 GO GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009944 polarity specification of adaxial/abaxial axis; GO:0010022 meristem determinacy; GO:0010094 specification of carpel identity; GO:0010254 nectary development; GO:0010582 floral meristem... KEGG KO: K25796 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa03g29210	PaHa03g29210`PaHa03g29210.1`	…GO:0005634 \| GO:0006355 \| GO:0009507 \| GO:0010150 \| GO:0031347 \| GO:0048366 \| DNA-binding transcription factor activity \| protein binding \| nucleus \| regulation of DNA-templated transcription \| chloroplast \| leaf senescence \| regulation of defense response \| leaf development Show annotation evidence eggNOG Preferred name: TCP13 \| Seed ortholog: 337451.A0A443NXJ4 \| COG: S \| eggNOG OG: TCP@131567\|A-1*, TCP@2759\|F-3, TCP@3398\|FG-13, TCP@58023\|f-6 GO GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009507 chloroplast; GO:0010150 leaf senescence; GO:0031347 regulation of defense response; GO:0048366 leaf development	eggNOGGO eggNOG-inferred	Record JBrowse Workspace
Select PaHa03g29380	PaHa03g29380`PaHa03g29380.1`	…nt \| vernalization response \| Cdc73/Paf1 complex \| RNA polymerase II-specific DNA-binding transcription factor binding \| RNA polymerase II C-terminal domain phosphoserine binding Show annotation evidence eggNOG Preferred name: VIP4 \| Seed ortholog: 337451.A0A3S3MIT1 \| COG: S \| eggNOG OG: Leo1@2759\|A-1 GO GO:0003674 molecular_function; GO:0003712 transcription coregulator activity; GO:0003723 RNA binding; GO:0005515 protein binding; GO:0005634 nucleus; GO:0009910 negative regulation of flower development; GO:0010048 vernalization response; GO:0016593 Cdc73/Paf1 complex; GO:0061629 RNA polymerase II-specific DNA-binding transcription factor binding; GO:1990269 RNA polymerase II C-terminal domain phosphoserine binding KEGG KO: K15177 \| BRITE: 00001, 03021	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa03g29500	PaHa03g29500`PaHa03g29500.1`	…omal large subunit binding \| ubiquitin binding \| molecular adaptor activity \| DNA-binding transcription factor binding Show annotation evidence eggNOG Preferred name: LOC107933378 \| Seed ortholog: 3983.A0A2C9URN2 \| COG: S \| eggNOG OG: HA2@131567\|Ay-8, HA2@1437183\|Lys-43, HA2@2759\|TJ-16, Helicase_C\|KFC4E0@2759, Helicase_C\|KFC4E0@3398, OB_NTP_bind@131567\|C-2, OB_NTP_bind@2759\|YK-17, OB_NTP_bind@3398\|CUn-30 GO GO:0000182 rDNA binding; GO:0003723 RNA binding; GO:0003724 RNA helicase activity; GO:0003725 double-stranded RNA binding; GO:0003729 mRNA binding; GO:0005515 protein binding; GO:0005634 nucleus; GO:0008186 ATP-dependent activity, acting on RNA; GO:0008380 RNA splicing; GO:0009793 embryo development ending in seed dormancy; GO:0016020 membrane; GO:0035194 regulatory ncRNA-mediated post-transcriptional gene... KEGG EC: ec:5.6.2.6 \| KO: K12813 \| Pathway: 03040 \| BRITE: 00001, 01000, 03041	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa03g29530	PaHa03g29530`PaHa03g29530.1`	…34_459 \| zf-C2H2_6_8_32 \| GO:0003700 \| GO:0005575 \| GO:0005634 \| GO:0006355 \| DNA-binding transcription factor activity \| cellular_component \| nucleus \| regulation of DNA-templated transcription Show annotation evidence eggNOG Preferred name: ZAT9 \| Seed ortholog: 337451.A0A443NFH1 \| COG: S \| eggNOG OG: zf-C2H2_6@131567\|B-2, zf-C2H2_6@3398\|DT-12 GO GO:0003700 DNA-binding transcription factor activity; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription	eggNOGGO eggNOG-inferred	Record JBrowse Workspace
Select PaHa03g29640	PaHa03g29640`PaHa03g29640.1`	PaHa03g29640 \| PaHa03g29640.1 \| EIF6 \| 337451.A0A3S3MYB8 \| eIF-6@131567\|A-1 \| eIF-6@1437183\|ZI-25 \| S \| K03264 \| 03008 \| 00001 \| 03009 \| 03012 \| eIF-6_77_276 \| GO:0000054 \| GO:0000463 \| GO:0000466 \| GO:0003743 \| GO:0005515 \| GO:0005575 \| GO:0005634 \| GO... Show annotation evidence eggNOG Preferred name: EIF6 \| Seed ortholog: 337451.A0A3S3MYB8 \| COG: S \| eggNOG OG: eIF-6@131567\|A-1, eIF-6@1437183\|ZI-25 GO GO:0000054 ribosomal subunit export from nucleus; GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0003743 translation initiation factor activity; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005638 lamin filament; GO... KEGG KO: K03264 \| Pathway: 03008 \| BRITE: 00001, 03009, 03012	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa03g30100	PaHa03g30100`PaHa03g30100.1`	…87 \| GO:0045893 \| transcription cis-regulatory region binding \| DNA binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| regulation of DNA-templated transcription \| zinc ion binding \| response to auxin \| response to salicylic acid \| cell wall modification \| positive regu… Show annotation evidence eggNOG Preferred name: DOF3.4 \| Seed ortholog: 337451.A0A443NFH8 \| COG: S \| eggNOG OG: zf-Dof@131567\|A-1*, zf-Dof@1437183\|LQ-13, zf-Dof@3193\|Bw-8, zf-Dof@33090\|d-5, zf-Dof@3398\|Eg-10 GO GO:0000976 transcription cis-regulatory region binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0008270 zinc ion binding; GO:0009733 response to auxin; GO:0009751 response to salicylic acid; GO:0042545 cell wall modification; GO:0045787 positive regulation of cell cycle; GO...	eggNOGGO eggNOG-inferred	Record JBrowse Workspace
Select PaHa03g30160	PaHa03g30160`PaHa03g30160.1`	… checkpoint \| homologous chromosome segregation \| positive regulation of transcription by transcription factor localization \| cellular hyperosmotic salinity response \| regulation of mitotic cell cycle spindle assembly checkpoint \| centriole assembly \| positive regulation of protein localization to n… Show annotation evidence eggNOG Preferred name: LOC104601948 \| Seed ortholog: 337451.A0A3S3MD21 \| COG: S \| eggNOG OG: WD40@131567\|PY-13, WD40@2759\|wr-17, WD40@3398\|Yri-35 GO GO:0000159 protein phosphatase type 2A complex; GO:0000329 fungal-type vacuole membrane; GO:0000705 achiasmate meiosis I; GO:0001100 negative regulation of exit from mitosis; GO:0002119 nematode larval development; GO:0003674 molecular_function; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005934 cellular bud tip; GO:0005935 cellular bud neck; GO:0009792 embryo development ending in... KEGG KO: K04354 \| Pathway: 03015 \| BRITE: 00001, 01009, 03019, 03036	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa03g30290	PaHa03g30290`PaHa03g30290.1`	PaHa03g30290 \| PaHa03g30290.1 \| PAZX \| 337451.A0A443NFM8 \| Serpin@131567\|PT-13 \| Serpin@3398\|CmB-27 \| S \| K13963 \| 04310 \| 04610 \| 05133 \| 00001 \| 01002 \| Serpin_9_388 \| GO:0001822 \| GO:0001869 \| GO:0002034 \| GO:0004869 \| GO:0005515 \| GO:0005576 \| GO... Show annotation evidence eggNOG Preferred name: PAZX \| Seed ortholog: 337451.A0A443NFM8 \| COG: S \| eggNOG OG: Serpin@131567\|PT-13, Serpin@3398\|CmB-27 GO GO:0001822 kidney development; GO:0001869 negative regulation of complement activation, lectin pathway; GO:0002034 maintenance of blood vessel diameter homeostasis by renin-angiotensin; GO:0004869 cysteine-type endopeptidase inhibitor activity; GO:0005515 protein binding; GO:0005576 extracellular region; GO:0005737 cytoplasm; GO:0007614 short-term memory; GO:0008015 blood circulation; GO:0010447 response to acidic... KEGG KO: K13963 \| Pathway: 04310, 04610, 05133 \| BRITE: 00001, 01002	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa03g30320	PaHa03g30320`PaHa03g30320.1`	…629 \| GO:0048449 \| GO:0090701 \| transcription cis-regulatory region binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| cytosol \| regulation of DNA-templated transcription \| negative regulation of gene expression \| floral organ formation \| specification of plant organ i… Show annotation evidence eggNOG Preferred name: LOC123119581 \| Seed ortholog: 337451.A0A3S3MPD3 \| COG: S \| eggNOG OG: Myb_DNA-binding@33090\|B-2!, Myb_DNA-binding@3398\|Ab-9, Myb_DNA-binding@35493\|X-6 GO GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005829 cytosol; GO:0006355 regulation of DNA-templated transcription; GO:0010629 negative regulation of gene expression; GO:0048449 floral organ formation; GO:0090701 specification of plant organ identity	eggNOGGO eggNOG-inferred	Record JBrowse Workspace
Select PaHa03g30530	PaHa03g30530`PaHa03g30530.1`	…\| glycolytic process through glucose-6-phosphate \| RNA polymerase II-specific DNA-binding transcription factor binding \| extracellular exosome \| cellular response to magnesium ion \| cellular response to cAMP \| cellular response to estrogen stimulus \| cellular response to xenobiotic stimulus \| cellul… Show annotation evidence eggNOG Preferred name: LOC123171571 \| Seed ortholog: 337451.A0A443NFJ9 \| COG: COG0158 \| eggNOG OG: FBPase@131567\|A-1, FBPase_C@131567\|A-1 GO GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005576 extracellular region; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005829 cytosol; GO:0005886 plasma membrane; GO:0005975 carbohydrate metabolic process; GO:0005983 starch catabolic process; GO:0005985 sucrose metabolic process; GO:0005986 sucrose biosynthetic process; GO... KEGG EC: ec:3.1.3.11 \| KO: K03841 \| Pathway: 00010, 00030, 00051, 00710, 01100, 01110, 01200 \| Module: M00003, M00165, M00344 \| BRITE: 00001, 01000, 04147	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa03g30550	PaHa03g30550`PaHa03g30550.1`	…92 \| GO:1990110 \| transcription cis-regulatory region binding \| DNA binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| regulation of DNA-templated transcription \| flower development \| regulation of floral meristem growth \| lateral root formation \| maintenance of shoot … Show annotation evidence eggNOG Preferred name: AIL6 \| Seed ortholog: 337451.A0A3S3Q2B2 \| COG: S \| eggNOG OG: AP2@131567\|Eo-12, AP2@3193\|Apr-24, AP2@33090\|Xs-18, AP2@3398\|BfV-26, AP2@58023\|BJE-25 GO GO:0000976 transcription cis-regulatory region binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009908 flower development; GO:0010080 regulation of floral meristem growth; GO:0010311 lateral root formation; GO:0010492 maintenance of shoot apical meristem identity; GO... KEGG KO: K09285 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa03g30650	PaHa03g30650`PaHa03g30650.1`	…is-regulatory region binding \| DNA-binding transcription activator activity \| DNA-binding transcription factor activity \| protein binding \| nucleus \| cytoplasm \| regulation of DNA-templated transcription \| regulation of cell size \| response to nematode \| regulation of defense response \| protein homo… Show annotation evidence eggNOG Preferred name: PCF2 \| Seed ortholog: 337451.A0A3S3MCM6 \| COG: S \| eggNOG OG: CCT@131567\|A-1, CCT@2759\|I-4, CCT@35493\|CW-9, GATA@131567\|A-1, GATA@2759\|x-6, GATA@35493\|Df-11, TCP@131221\|AC-7, TCP@131567\|A-1, TCP@2759\|G-3, TCP@3193\|Fh-13, tify@131567\|A-1, tify@35493\|AV-9 GO GO:0000976 transcription cis-regulatory region binding; GO:0001216 DNA-binding transcription activator activity; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0006355 regulation of DNA-templated transcription; GO:0008361 regulation of cell size; GO:0009624 response to nematode; GO:0031347 regulation of defense response; GO:0042803... KEGG KO: K09184, K11648, K11770, K14972, K18658, K21630 \| Pathway: 03082, 03250 \| BRITE: 00001, 01009, 03000, 03019, 03021, 03036	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa03g30710	PaHa03g30710`PaHa03g30710.1`	PaHa03g30710 \| PaHa03g30710.1 \| LOC109021170 \| 337451.A0A3S3NXX5 \| DUF908@2759\|A-1 \| DUF908@3193\|Cv-12 \| DUF913@2759\|A-1 \| DUF913@3193\|IL-14 \| HECT@131567\|A-1* \| HECT@2759\|ep-22 \| HECT@3193\|BOF-31 \| UBA@131567\|Dj-15 \| UBA@3193\|VH-25 \| UBM@131567\|G-3 \| UBM... Show annotation evidence eggNOG Preferred name: LOC109021170 \| Seed ortholog: 337451.A0A3S3NXX5 \| COG: COG2239 \| eggNOG OG: DUF908@2759\|A-1, DUF908@3193\|Cv-12, DUF913@2759\|A-1, DUF913@3193\|IL-14, HECT@131567\|A-1*, HECT@2759\|ep-22, HECT@3193\|BOF-31, UBA@131567\|Dj-15, UBA@3193\|VH-25, UBM@131567\|G-3, UBM@3193\|MG-18 GO GO:0000139 Golgi membrane; GO:0000209 protein polyubiquitination; GO:0000278 mitotic cell cycle; GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0000448 cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0000472 endonucleolytic cleavage... KEGG EC: ec:2.3.2.26 \| KO: K10592 \| Pathway: 04120 \| BRITE: 00001, 01000, 04121	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa03g30920	PaHa03g30920`PaHa03g30920.1`	…578 \| GO:0048586 \| GO:0071249 \| transcription cis-regulatory region binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| response to nutrient \| response to nitrate \| stomatal lineage progression \| protein homodimerization activity \| lateral root development \| positive re… Show annotation evidence eggNOG Preferred name: LOC123128283 \| Seed ortholog: 4615.A0A199V158 \| COG: S \| eggNOG OG: K-box@131567\|A-1, K-box@2759\|F-3, K-box@3398\|Fw-11!, K-box@35493\|M-4, SRF-TF@131567\|A-1, SRF-TF@2759\|C-2!, SRF-TF@3398\|BGP-26!, SRF-TF@35493\|jX-20 GO GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0007584 response to nutrient; GO:0010167 response to nitrate; GO:0010440 stomatal lineage progression; GO:0042803 protein homodimerization activity; GO:0048527 lateral root development; GO:0048578 positive regulation of long-day photoperiodism, flowering;... KEGG KO: K09264 \| Pathway: 04010, 04011, 04013, 04022, 04111, 04371, 04921, 04928, 05166, 05202, 05203, 05418 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa03g31140	PaHa03g31140`PaHa03g31140.1`	…uclear thyroid hormone receptor binding \| ubiquitin protein ligase activity \| DNA-binding transcription factor binding Show annotation evidence eggNOG Preferred name: MED17 \| Seed ortholog: 337451.A0A443NFW0 \| COG: S \| eggNOG OG: Med17@2759\|A-1 GO GO:0000979 RNA polymerase II core promoter sequence-specific DNA binding; GO:0003712 transcription coregulator activity; GO:0003713 transcription coactivator activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0006974 DNA damage response; GO:0009640 photomorphogenesis; GO:0016592 mediator complex; GO:0035196 miRNA processing; GO:0042809 nuclear vitamin... KEGG KO: K15133 \| Pathway: 04919 \| BRITE: 00001, 03021	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa03g31180	PaHa03g31180`PaHa03g31180.1`	…sis I \| gamete generation \| germ cell development \| spermatogenesis \| brain development \| transcription factor binding \| poly(A) binding \| biological_process \| eukaryotic initiation factor 4E binding \| gonad development \| JUN kinase binding \| extrinsic apoptotic signaling pathway via death domain re… Show annotation evidence eggNOG Preferred name: RH52 \| Seed ortholog: 337451.A0A3S3MYM2 \| COG: S \| eggNOG OG: DEAD@131567\|Fpr-34, DEAD@2759\|PnN-44, DEAD@35493\|ADZt-58, Helicase_C\|82CO8R@131567, Helicase_C\|82CO8R@58023 GO GO:0000390 spliceosomal complex disassembly; GO:0002151 G-quadruplex RNA binding; GO:0002183 cytoplasmic translational initiation; GO:0002753 cytoplasmic pattern recognition receptor signaling pathway; GO:0003677 DNA binding; GO:0003678 DNA helicase activity; GO:0003723 RNA binding; GO:0003724 RNA helicase activity; GO:0003727 single-stranded RNA binding; GO:0003729 mRNA binding; GO:0003743 translation initiation... KEGG EC: ec:5.6.2.7 \| KO: K11594 \| Pathway: 03040, 04622, 05161, 05203 \| BRITE: 00001, 01000, 03019, 03036, 03041	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa03g31330	PaHa03g31330`PaHa03g31330.1`	…GO:0010166 \| GO:0042335 \| GO:0043565 \| GO:0045893 \| GO:1902584 \| GO:1904278 \| DNA-binding transcription factor activity \| nucleus \| response to osmotic stress \| response to water deprivation \| response to abscisic acid \| ethylene-activated signaling pathway \| cutin biosynthetic process \| wax metabol… Show annotation evidence eggNOG Preferred name: WIN1 \| Seed ortholog: 337451.A0A443NFV8 \| COG: S \| eggNOG OG: AP2@131567\|DU-11, AP2@3193\|Nk-16, AP2@33090\|Hu-14, AP2@3398\|lN-20 GO GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0006970 response to osmotic stress; GO:0009414 response to water deprivation; GO:0009737 response to abscisic acid; GO:0009873 ethylene-activated signaling pathway; GO:0010143 cutin biosynthetic process; GO:0010166 wax metabolic process; GO:0042335 cuticle development; GO:0043565 sequence-specific DNA binding; GO:0045893 positive...	eggNOGGO eggNOG-inferred	Record JBrowse Workspace
Select PaHa03g31470	PaHa03g31470`PaHa03g31470.1`	…944 \| GO:1902183 \| GO:2000024 \| transcription cis-regulatory region binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| regulation of DNA-templated transcription \| polarity specification of adaxial/abaxial axis \| regulation of shoot apical meristem development \| regulat… Show annotation evidence eggNOG Preferred name: LOC104595406 \| Seed ortholog: 337451.A0A443NFW7 \| COG: S \| eggNOG OG: YABBY@2759\|C-2!, YABBY@3398\|Bl-10 GO GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009944 polarity specification of adaxial/abaxial axis; GO:1902183 regulation of shoot apical meristem development; GO:2000024 regulation of leaf development KEGG KO: K25796 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa03g31490	PaHa03g31490`PaHa03g31490.1`	…944 \| GO:1902183 \| GO:2000024 \| transcription cis-regulatory region binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| regulation of DNA-templated transcription \| polarity specification of adaxial/abaxial axis \| regulation of shoot apical meristem development \| regulat… Show annotation evidence eggNOG Preferred name: LOC104595406 \| Seed ortholog: 337451.A0A3S3NDC2 \| COG: S \| eggNOG OG: YABBY@2759\|C-2!, YABBY@3398\|Bl-10 GO GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009944 polarity specification of adaxial/abaxial axis; GO:1902183 regulation of shoot apical meristem development; GO:2000024 regulation of leaf development KEGG KO: K25796 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa03g31550	PaHa03g31550`PaHa03g31550.1`	…bind_10_99 \| GO:0003700 \| GO:0005515 \| GO:0005634 \| GO:0006970 \| GO:0009737 \| DNA-binding transcription factor activity \| protein binding \| nucleus \| response to osmotic stress \| response to abscisic acid Show annotation evidence eggNOG Preferred name: HSFC1 \| Seed ortholog: 337451.A0A3S3M5G2 \| COG: S \| eggNOG OG: HSF_DNA-bind@131567\|Dp-10, HSF_DNA-bind@1437183\|AMo-22, HSF_DNA-bind@33090\|mg-19 GO GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006970 response to osmotic stress; GO:0009737 response to abscisic acid KEGG KO: K09419 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa03g31650	PaHa03g31650`PaHa03g31650.1`	PaHa03g31650 \| PaHa03g31650.1 \| RPL37A \| 337451.A0A443NFV3 \| Ribosomal_L37e@131567\|A-1 \| Ribosomal_L37e@58023\|OJ-19 \| S \| K02922 \| 03010 \| 00001 \| 01610 \| 03011 \| Ribosomal_L37e_3_53 \| GO:0000448 \| GO:0002181 \| GO:0003723 \| GO:0003735 \| GO:0005634 \| GO... Show annotation evidence eggNOG Preferred name: RPL37A \| Seed ortholog: 337451.A0A443NFV3 \| COG: S \| eggNOG OG: Ribosomal_L37e@131567\|A-1, Ribosomal_L37e@58023\|OJ-19 GO GO:0000448 cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0002181 cytoplasmic translation; GO:0003723 RNA binding; GO:0003735 structural constituent of ribosome; GO:0005634 nucleus; GO:0005730 nucleolus; GO:0005737 cytoplasm; GO:0005829 cytosol; GO:0005840 ribosome; GO:0006412 translation; GO:0006941 striated muscle contraction; GO:0007283... KEGG KO: K02922 \| Pathway: 03010 \| BRITE: 00001, 01610, 03011	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa03g31880	PaHa03g31880`PaHa03g31880.1`	…481 \| GO:0048444 \| GO:0051302 \| transcription cis-regulatory region binding \| DNA-binding transcription factor activity \| nucleus \| regulation of DNA-templated transcription \| regulation of meristem structural organization \| guard mother cell cytokinesis \| stomatal complex patterning \| stomatal line… Show annotation evidence eggNOG Preferred name: TCX2 \| Seed ortholog: 337451.A0A3S3MJ94 \| COG: S \| eggNOG OG: TCR@131221\|Lu-19, TCR@131567\|A-1*, TCR@2759\|AQ-7!, TCR@3193\|OY-20 GO GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009934 regulation of meristem structural organization; GO:0010235 guard mother cell cytokinesis; GO:0010375 stomatal complex patterning; GO:0010440 stomatal lineage progression; GO:0010481 epidermal cell division; GO:0048444... KEGG KO: K21776 \| Pathway: 04218, 04814 \| BRITE: 00001	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace

Functional Annotation Search

2,418 genes for “transcription factor”

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