Functional Annotation Search

Functional discovery

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Search integrated eggNOG, Gene Ontology, and KEGG evidence with phrases such as fatty acid, lipid metabolism, kinase, or transcription factor.

33,382: Hass annotations
3+: indexed evidence types

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2,418 genes for “transcription factor”

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Select	Gene	Matched annotation	Evidence	Actions
Select PaHa11g12300	PaHa11g12300`PaHa11g12300.1`	…ntrapment activity \| centromeric sister chromatid cohesion \| lncRNA binding \| DNA-binding transcription factor binding Show annotation evidence eggNOG Preferred name: LOC107919977 \| Seed ortholog: 3988.B9RM05 \| COG: S \| eggNOG OG: Rad21_Rec8@131567\|AQ-7, Rad21_Rec8@33090\|Ya-23, Rad21_Rec8_N@131567\|A-1*, Rad21_Rec8_N@2759\|Ae-8, Rad21_Rec8_N@33090\|NW-16 GO GO:0000987 cis-regulatory region sequence-specific DNA binding; GO:0003674 molecular_function; GO:0003682 chromatin binding; GO:0003684 damaged DNA binding; GO:0003690 double-stranded DNA binding; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006302 double-strand break repair; GO:0007062 sister chromatid cohesion; GO:0019901 protein kinase binding; GO:0043565 sequence-specific DNA binding; GO:0061776 ATP... KEGG KO: K06670 \| Pathway: 04110, 04111, 04113 \| BRITE: 00001, 03036	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa11g13510	PaHa11g13510`PaHa11g13510.1`	…latory region binding \| cis-regulatory region sequence-specific DNA binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| cytoplasm \| biological_process \| suberin biosynthetic process \| positive regulation of fatty acid biosynthetic process \| cellular response to auxin st… Show annotation evidence eggNOG Preferred name: LOC107905448 \| Seed ortholog: 337451.A0A443PNS0 \| COG: S \| eggNOG OG: Myb_DNA-binding@131567\|AOS-27, Myb_DNA-binding@1437183\|ZPN-55, Myb_DNA-binding@3193\|HJd-40, Myb_DNA-binding@33090\|FSl-38, Myb_DNA-binding@35493\|GNw-39, Myb_DNA-binding@58023\|Miz-45 GO GO:0000976 transcription cis-regulatory region binding; GO:0000987 cis-regulatory region sequence-specific DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0008150 biological_process; GO:0010345 suberin biosynthetic process; GO:0045723 positive regulation of fatty acid biosynthetic process; GO:0071365 cellular response to... KEGG KO: K09422 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa11g14120	PaHa11g14120`PaHa11g14120.1`	…73 \| GO:0048768 \| transcription cis-regulatory region binding \| DNA binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| response to water deprivation \| response to blue light \| response to abscisic acid \| abscisic acid-activated signaling pathway \| negative regulation o… Show annotation evidence eggNOG Preferred name: ATHB-16 \| Seed ortholog: 337451.A0A443PP06 \| COG: S \| eggNOG OG: HALZ@131567\|s-8, HALZ@3398\|Kb-16, Homeodomain@131567\|XU-17, Homeodomain@1437183\|NCf-36, Homeodomain@2759\|ACU-20!, Homeodomain@3193\|FTx-30, Homeodomain@3398\|GUG-31, Homeodomain@35493\|BwQ-25 GO GO:0000976 transcription cis-regulatory region binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0009414 response to water deprivation; GO:0009637 response to blue light; GO:0009737 response to abscisic acid; GO:0009738 abscisic acid-activated signaling pathway; GO:0009788 negative regulation of abscisic acid-activated... KEGG KO: K09338 \| Pathway: 04113, 04148, 04927, 04934, 05202 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa11g14210	PaHa11g14210`PaHa11g14210.1`	…1 \| 03000 \| HLH_122_173 \| GO:0003700 \| GO:0005515 \| GO:0005634 \| GO:0006355 \| DNA-binding transcription factor activity \| protein binding \| nucleus \| regulation of DNA-templated transcription Show annotation evidence eggNOG Preferred name: BHLH96 \| Seed ortholog: 337451.A0A3S3N522 \| COG: S \| eggNOG OG: HLH@131567\|OW-12, HLH@3193\|AAN-17, HLH@3398\|Aqo-20, HLH@35493\|gX-15 GO GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription KEGG KO: K09092, K22495 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa11g14600	PaHa11g14600`PaHa11g14600.1`	…ing \| RNA polymerase II cis-regulatory region sequence-specific DNA binding \| DNA-binding transcription factor activity, RNA polymerase II-specific \| DNA-binding transcription repressor activity, RNA polymerase II-specific \| DNA-binding transcription activator activity, RNA polymerase II-specific \| … Show annotation evidence eggNOG Preferred name: BHLH30 \| Seed ortholog: 337451.A0A3S3NQT1 \| COG: S \| eggNOG OG: HLH@131567\|OW-12, HLH@1437183\|BXh-22, HLH@35493\|ANK-18 GO GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding; GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0001227 DNA-binding transcription repressor activity, RNA polymerase II-specific; GO:0001228 DNA-binding transcription activator activity, RNA polymerase II... KEGG KO: K09092, K22495 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa11g14920	PaHa11g14920`PaHa11g14920.1`	PaHa11g14920 \| PaHa11g14920.1 \| LOC109002991 \| 337451.A0A443NTE7 \| CBFD_NFYB_HMF@131567\|BS-10 \| CBFD_NFYB_HMF@1437183\|CnF-35 \| CBFD_NFYB_HMF@2759\|GM-15 \| CBFD_NFYB_HMF@33090\|Bcs-31 \| COG2036 \| ec:6.5.1.3 \| K08065 \| 04612 \| 05152 \| 05166 \| 00001 \| 03000 \|... Show annotation evidence eggNOG Preferred name: LOC109002991 \| Seed ortholog: 337451.A0A443NTE7 \| COG: COG2036 \| eggNOG OG: CBFD_NFYB_HMF@131567\|BS-10, CBFD_NFYB_HMF@1437183\|CnF-35, CBFD_NFYB_HMF@2759\|GM-15, CBFD_NFYB_HMF@33090\|Bcs-31 GO GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000785 chromatin; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005667 transcription regulator complex; GO:0005721 pericentric heterochromatin; GO:0005737 cytoplasm; GO:0006109 regulation of carbohydrate metabolic process; GO:0006351 DNA-templated transcription; GO:0006355 regulation of DNA-templated... KEGG EC: ec:6.5.1.3 \| KO: K08065 \| Pathway: 04612, 05152, 05166 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa11g15230	PaHa11g15230`PaHa11g15230.1`	…733 \| GO:0009908 \| GO:0010154 \| transcription cis-regulatory region binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| regulation of DNA-templated transcription \| response to auxin \| flower development \| fruit development Show annotation evidence eggNOG Preferred name: ARF12 \| Seed ortholog: 337451.A0A443P1L2 \| COG: S \| eggNOG OG: AUX_IAA@131567\|A-1, AUX_IAA@2759\|AW-7, AUX_IAA@3193\|xW-20, AUX_IAA@3398\|Aet-24, Auxin_resp@131221\|y-7, Auxin_resp@131567\|A-1, Auxin_resp@2759\|O-4, Auxin_resp@3193\|Aa-8, Auxin_resp@3398\|Ch-11, B3@131221\|yd-19, B3@131567\|A-1*, B3@3193\|AqU-23, B3@33090\|Id-12, B3@3398\|BOY-25 GO GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009733 response to auxin; GO:0009908 flower development; GO:0010154 fruit development KEGG KO: K14486 \| Pathway: 04075 \| BRITE: 00001	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa11g15310	PaHa11g15310`PaHa11g15310.1`	…oliferator activated receptor binding \| apoplast \| RNA polymerase II-specific DNA-binding transcription factor binding Show annotation evidence eggNOG Preferred name: LOC107942651 \| Seed ortholog: 337451.A0A3S3N565 \| COG: S \| eggNOG OG: LNS2@131567\|A-1, LNS2@58023\|EM-17, Lipin_N@2759\|A-1, Lipin_N@3193\|Dc-16, Lipin_mid@2759\|A-1, Lipin_mid@3398\|f-7 GO GO:0000287 magnesium ion binding; GO:0000976 transcription cis-regulatory region binding; GO:0003674 molecular_function; GO:0003713 transcription coactivator activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006629 lipid metabolic process; GO:0008195 phosphatidate phosphatase activity; GO:0008654 phospholipid biosynthetic process; GO:0016036 cellular response to phosphate starvation; GO:0016791... KEGG EC: ec:3.1.3.4 \| KO: K15728 \| Pathway: 00561, 00564, 01100, 01110 \| Module: M00089 \| BRITE: 00001, 01000, 01009	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa11g15510	PaHa11g15510`PaHa11g15510.1`	…60 \| GO:0045892 \| transcription cis-regulatory region binding \| DNA binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| regulation of DNA-templated transcription \| ethylene-activated signaling pathway \| glucosinolate metabolic process \| negative regulation of DNA-templa… Show annotation evidence eggNOG Preferred name: NtERF#206 \| Seed ortholog: 337451.A0A443PP72 \| COG: S \| eggNOG OG: AP2@131567\|DU-11, AP2@33090\|uY-21, AP2@58023\|ATk-23 GO GO:0000976 transcription cis-regulatory region binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009873 ethylene-activated signaling pathway; GO:0019760 glucosinolate metabolic process; GO:0045892 negative regulation of DNA-templated transcription KEGG KO: K09286 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa11g15540	PaHa11g15540`PaHa11g15540.1`	…ind_12_101 \| GO:0003700 \| GO:0005634 \| GO:0009408 \| GO:0045892 \| GO:0080136 \| DNA-binding transcription factor activity \| nucleus \| response to heat \| negative regulation of DNA-templated transcription \| priming of cellular response to stress Show annotation evidence eggNOG Preferred name: HSF24 \| Seed ortholog: 337451.A0A443PP56 \| COG: S \| eggNOG OG: HSF_DNA-bind@131567\|Dp-10, HSF_DNA-bind@33090\|Tz-16, HSF_DNA-bind@3398\|Agq-24, HSF_DNA-bind@35493\|AWH-23 GO GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0009408 response to heat; GO:0045892 negative regulation of DNA-templated transcription; GO:0080136 priming of cellular response to stress KEGG KO: K09419 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa11g15620	PaHa11g15620`PaHa11g15620.1`	…57 \| GO:1903648 \| transcription cis-regulatory region binding \| DNA binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| regulation of DNA-templated transcription \| response to water deprivation \| response to salt stress \| response to abscisic acid \| abscisic acid-activa… Show annotation evidence eggNOG Preferred name: LOC104606250 \| Seed ortholog: 337451.A0A443PP82 \| COG: S \| eggNOG OG: bZIP_1@131567\|BO-8!, bZIP_1@1437183\|Brz-30, bZIP_1@3193\|AIo-24, bZIP_1@33090\|aa-18, bZIP_1@35493\|AAI-23 GO GO:0000976 transcription cis-regulatory region binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009414 response to water deprivation; GO:0009651 response to salt stress; GO:0009737 response to abscisic acid; GO:0009738 abscisic acid-activated signaling pathway; GO:0019760... KEGG KO: K14432 \| Pathway: 04075 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa11g15700	PaHa11g15700`PaHa11g15700.1`	… 00001 \| 03000 \| HSF_DNA-bind_25_114 \| GO:0003700 \| GO:0005634 \| GO:0008356 \| DNA-binding transcription factor activity \| nucleus \| asymmetric cell division Show annotation evidence eggNOG Preferred name: HSFB4 \| Seed ortholog: 337451.A0A3S3NHW4 \| COG: S \| eggNOG OG: HSF_DNA-bind@131567\|Dp-10, HSF_DNA-bind@33090\|Tz-16, HSF_DNA-bind@3398\|BbU-28, HSF_DNA-bind@35493\|AWI-23 GO GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0008356 asymmetric cell division KEGG KO: K09419 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa11g15760	PaHa11g15760`PaHa11g15760.1`	… of type I interferon-mediated signaling pathway \| RNA polymerase II-specific DNA-binding transcription factor binding \| canonical inflammasome complex \| pyroptotic inflammatory response \| positive regulation of ERK1 and ERK2 cascade \| nucleotide-binding oligomerization domain containing 1 signaling… Show annotation evidence eggNOG Preferred name: FBW2 \| Seed ortholog: 337451.A0A3S3PKD7 \| COG: S \| eggNOG OG: F-box-like@131567\|Asa-23, F-box-like@1437183\|fqe-55, F-box-like@2759\|BKN-24, F-box-like@58023\|baG-49, LRR_6@131567\|Uj-15, LRR_6@1437183\|ItO-33, LRR_6@3398\|CWh-25 GO GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000781 chromosome, telomeric region; GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0001659 temperature homeostasis; GO:0002221 pattern recognition receptor signaling pathway; GO:0002227 innate immune response in mucosa; GO:0002253 activation of immune response; GO:0002606 positive regulation of... KEGG EC: ec:2.7.11.1 \| KO: K08060, K08727, K10165, K10273, K10275, K10278, K12653, K17579, K19409, K20864, K22265, K22614, K22615, K22662, K22663, K22665, K22666 \| Pathway: 04137, 04612, 04621, 04622, 04668, 05130, 05132, 05133, 05145, 05152, 05164, 05321, 05340 \| BRITE: 00001, 01000, 01001, 01009, 04054, 04121, 04131, 04812	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa11g15770	PaHa11g15770`PaHa11g15770.1`	… of type I interferon-mediated signaling pathway \| RNA polymerase II-specific DNA-binding transcription factor binding \| canonical inflammasome complex \| pyroptotic inflammatory response \| positive regulation of ERK1 and ERK2 cascade \| nucleotide-binding oligomerization domain containing 1 signaling… Show annotation evidence eggNOG Preferred name: FBW2 \| Seed ortholog: 337451.A0A3S3PKD7 \| COG: S \| eggNOG OG: F-box-like@131567\|Asa-23, F-box-like@1437183\|fqe-55, F-box-like@2759\|BKN-24, F-box-like@58023\|baG-49, LRR_6@131567\|Uj-15, LRR_6@1437183\|ItO-33, LRR_6@3398\|CWh-25 GO GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000781 chromosome, telomeric region; GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0001659 temperature homeostasis; GO:0002221 pattern recognition receptor signaling pathway; GO:0002227 innate immune response in mucosa; GO:0002253 activation of immune response; GO:0002606 positive regulation of... KEGG EC: ec:2.7.11.1 \| KO: K08060, K08727, K10165, K10273, K10275, K10278, K12653, K17579, K19409, K20864, K22265, K22614, K22615, K22662, K22663, K22665, K22666 \| Pathway: 04137, 04612, 04621, 04622, 04668, 05130, 05132, 05133, 05145, 05152, 05164, 05321, 05340 \| BRITE: 00001, 01000, 01001, 01009, 04054, 04121, 04131, 04812	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa11g15780	PaHa11g15780`PaHa11g15780.1`	…AS_116_501 \| GO:0003700 \| GO:0005515 \| GO:0005783 \| GO:0006355 \| GO:0031965 \| DNA-binding transcription factor activity \| protein binding \| endoplasmic reticulum \| regulation of DNA-templated transcription \| nuclear membrane Show annotation evidence eggNOG Preferred name: NSP2 \| Seed ortholog: 337451.A0A443PPB3 \| COG: S \| eggNOG OG: GRAS@131567\|n-8, GRAS@3193\|CH-12, GRAS@58023\|Go-15 GO GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005783 endoplasmic reticulum; GO:0006355 regulation of DNA-templated transcription; GO:0031965 nuclear membrane KEGG KO: K27745 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa11g15940	PaHa11g15940`PaHa11g15940.1`	…3@3398\|G-3! \| UNK.M0O3@58023\|C-2 \| S \| GO:0003700 \| GO:0005515 \| GO:0005634 \| DNA-binding transcription factor activity \| protein binding \| nucleus Show annotation evidence eggNOG Preferred name: BHLH112 \| Seed ortholog: 337451.A0A443PP87 \| COG: S \| eggNOG OG: UNK.M0O3@131567\|A-1*, UNK.M0O3@3398\|G-3!, UNK.M0O3@58023\|C-2 GO GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus	eggNOGGO eggNOG-inferred	Record JBrowse Workspace
Select PaHa11g16030	PaHa11g16030`PaHa11g16030.1`	…06 \| GO:0009910 \| GO:0043481 \| GO:0048497 \| GO:0048510 \| molecular_function \| DNA-binding transcription factor activity \| nucleus \| mRNA processing \| plasmodesma \| negative regulation of flower development \| anthocyanin accumulation in tissues in response to UV light \| maintenance of floral organ id… Show annotation evidence eggNOG Preferred name: HUA2 \| Seed ortholog: 337451.A0A3S3NQY1 \| COG: S \| eggNOG OG: CID@131567\|A-1, CID@2759\|AE-6, CID@35493\|Di-10, PWWP@131567\|A-1, PWWP@2759\|hk-17, PWWP@3193\|ANg-21 GO GO:0003674 molecular_function; GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0006397 mRNA processing; GO:0009506 plasmodesma; GO:0009910 negative regulation of flower development; GO:0043481 anthocyanin accumulation in tissues in response to UV light; GO:0048497 maintenance of floral organ identity; GO:0048510 regulation of timing of transition from vegetative to reproductive phase KEGG EC: ec:2.1.1.37 \| KO: K13167, K13191, K15560, K16847, K17398 \| Pathway: 00270, 01100, 04148 \| Module: M00035 \| BRITE: 00001, 01000, 03000, 03021, 03032, 03036, 03041, 04990	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa11g16210	PaHa11g16210`PaHa11g16210.1`	…65 \| GO:0048578 \| GO:0140537 \| DNA-binding transcription activator activity \| DNA-binding transcription factor activity \| protein binding \| nucleus \| regulation of DNA-templated transcription \| regulation of circadian rhythm \| positive regulation of circadian rhythm \| sequence-specific DNA binding \|… Show annotation evidence eggNOG Preferred name: TCP7 \| Seed ortholog: 337451.A0A3S4PMX6 \| COG: S \| eggNOG OG: TCP@131221\|AC-7, TCP@131567\|A-1*, TCP@2759\|G-3, TCP@3193\|DK-11, TCP@3398\|EV-12 GO GO:0001216 DNA-binding transcription activator activity; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0042752 regulation of circadian rhythm; GO:0042753 positive regulation of circadian rhythm; GO:0043565 sequence-specific DNA binding; GO:0048578 positive regulation of long-day photoperiodism,... KEGG KO: K16221 \| Pathway: 04712 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa11g16570	PaHa11g16570`PaHa11g16570.1`	…GO:0003677 \| GO:0003700 \| GO:0005634 \| GO:0010197 \| karyogamy \| DNA binding \| DNA-binding transcription factor activity \| nucleus \| polar nucleus fusion Show annotation evidence eggNOG Preferred name: LOC104591676 \| Seed ortholog: 337451.A0A3S3QYJ0 \| COG: S \| eggNOG OG: HMG_box@131567\|Aj-7, HMG_box@2759\|Ii-12!, HMG_box@33090\|AHq-20 GO GO:0000741 karyogamy; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0010197 polar nucleus fusion KEGG EC: ec:2.1.1.354 \| KO: K25507 \| Pathway: 00310, 01100, 03410, 04140, 04217, 04613 \| BRITE: 00001, 03036	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa11g16960	PaHa11g16960`PaHa11g16960.1`	…0090397 \| cis-regulatory region sequence-specific DNA binding \| DNA binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| regulation of DNA-templated transcription \| seed coat development \| protein dimerization activity \| seed development \| carpel development \| plant ovul… Show annotation evidence eggNOG Preferred name: AG2 \| Seed ortholog: 337451.A0A3S3R0U7 \| COG: S \| eggNOG OG: K-box@131221\|b-5, K-box@131567\|A-1, K-box@2759\|O-4, K-box@3398\|Mi-13, SRF-TF@131567\|A-1, SRF-TF@2759\|C-2!, SRF-TF@3398\|BXL-27, SRF-TF@35493\|jY-20 GO GO:0000987 cis-regulatory region sequence-specific DNA binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0010214 seed coat development; GO:0046983 protein dimerization activity; GO:0048316 seed development; GO:0048440 carpel development; GO:0048481 plant ovule development;... KEGG KO: K09264 \| Pathway: 04010, 04011, 04013, 04022, 04111, 04371, 04921, 04928, 05166, 05202, 05203, 05418 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa11g16980	PaHa11g16980`PaHa11g16980.1`	…F-TF_10_56 \| GO:0003700 \| GO:0005515 \| GO:0005634 \| GO:0010228 \| GO:0048364 \| DNA-binding transcription factor activity \| protein binding \| nucleus \| vegetative to reproductive phase transition of meristem \| root development Show annotation evidence eggNOG Preferred name: AGL12 \| Seed ortholog: 337451.A0A3S3NCZ6 \| COG: S \| eggNOG OG: K-box@131567\|A-1, K-box@1437183\|Bb-8, K-box@2759\|v-6, SRF-TF@131567\|A-1, SRF-TF@2759\|C-2!, SRF-TF@3193\|so-21, SRF-TF@3398\|APQ-23, SRF-TF@35493\|bP-19 GO GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0010228 vegetative to reproductive phase transition of meristem; GO:0048364 root development KEGG KO: K04378, K04454, K09260, K09261, K09262, K09264, K09265, K12412, K19807, K19808, K27808 \| Pathway: 04010, 04011, 04013, 04022, 04111, 04371, 04921, 04928, 05166, 05202, 05203, 05418 \| BRITE: 00001, 03000, 03021, 04131	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa11g17400	PaHa11g17400`PaHa11g17400.1`	…O:0009733 \| GO:0010150 \| GO:0042802 \| GO:0043565 \| GO:0045892 \| DNA binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| cytoplasm \| regulation of DNA-templated transcription \| cell death \| response to auxin \| leaf senescence \| identical protein binding \| sequence-specif… Show annotation evidence eggNOG Preferred name: ARF1 \| Seed ortholog: 337451.A0A443PPQ4 \| COG: S \| eggNOG OG: AUX_IAA@131567\|A-1, AUX_IAA@2759\|AW-7, AUX_IAA@3193\|qd-19, AUX_IAA@3398\|Amh-25, Auxin_resp@131567\|A-1, Auxin_resp@2759\|N-4, Auxin_resp@3398\|BT-10, B3@131221\|yd-19, B3@131567\|A-1*, B3@3193\|AHu-20, B3@33090\|Id-12, B3@3398\|BlQ-27 GO GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0006355 regulation of DNA-templated transcription; GO:0008219 cell death; GO:0009733 response to auxin; GO:0010150 leaf senescence; GO:0042802 identical protein binding; GO:0043565 sequence-specific DNA binding; GO:0045892 negative regulation of DNA-templated... KEGG KO: K14486 \| Pathway: 04075 \| BRITE: 00001	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa11g17480	PaHa11g17480`PaHa11g17480.1`	…molecular_function \| nucleic acid binding \| DNA binding \| chromatin binding \| DNA-binding transcription factor activity \| transcription coactivator activity \| transcription corepressor activity \| histone acetyltransferase activity \| enzyme inhibitor activity \| protein binding \| cellular_component \| … Show annotation evidence eggNOG Preferred name: KDM5A \| Seed ortholog: 337451.A0A3S3P3V3 \| COG: S \| eggNOG OG: PHD@131567\|A-1*, PHD@2759\|Vu-13 GO GO:0000118 histone deacetylase complex; GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000183 rDNA heterochromatin formation; GO:0000212 meiotic spindle organization; GO:0000278 mitotic cell cycle; GO:0000785 chromatin; GO:0000791 euchromatin; GO:0000812 Swr1 complex; GO:0000976 transcription cis-regulatory region binding; GO:0001650 fibrillar center; GO:0002040 sprouting angiogenesis;... KEGG EC: ec:1.14.11.65, ec:1.14.11.67, ec:2.3.2.27, ec:3.1.3.16 \| KO: K26271 \| Pathway: 03022 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa11g17490	PaHa11g17490`PaHa11g17490.1`	PaHa11g17490 \| PaHa11g17490.1 \| LOC104593941 \| 337451.A0A443PPL7 \| DUF5601@131567\|A-1* \| DUF5601@2759\|B-2! \| DUF5601@3398\|BI-9 \| VPS9@131567\|A-1* \| VPS9@2759\|Hl-11 \| VPS9@3398\|AzT-28 \| S \| K20131 \| 04137 \| 00001 \| 04131 \| DUF5601_30_94 \| VPS9_142_206 \| VPS9... Show annotation evidence eggNOG Preferred name: LOC104593941 \| Seed ortholog: 337451.A0A443PPL7 \| COG: S \| eggNOG OG: DUF5601@131567\|A-1, DUF5601@2759\|B-2!, DUF5601@3398\|BI-9, VPS9@131567\|A-1, VPS9@2759\|Hl-11, VPS9@3398\|AzT-28 GO GO:0000011 vacuole inheritance; GO:0001933 negative regulation of protein phosphorylation; GO:0002686 negative regulation of leukocyte migration; GO:0003674 molecular_function; GO:0005085 guanyl-nucleotide exchange factor activity; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005730 nucleolus; GO:0005737 cytoplasm; GO:0005768 endosome; GO:0005769 early endosome; GO:0005794 Golgi apparatus; GO... KEGG KO: K20131 \| Pathway: 04137 \| BRITE: 00001, 04131	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa11g17500	PaHa11g17500`PaHa11g17500.1`	…O:0006384 \| GO:0008150 \| GO:0008301 \| GO:0008585 \| GO:0031965 \| GO:0042791 \| GO:0042797 \| transcription factor TFIIIC complex \| RNA polymerase III general transcription initiation factor activity \| fibrillar center \| DNA binding \| protein binding \| nucleus \| nucleoplasm \| transcription by RNA polyme… Show annotation evidence eggNOG Preferred name: LOC104230302 \| Seed ortholog: 337451.A0A443PPM1 \| COG: COG0457 \| eggNOG OG: TPR_19@131567\|gd-12, TPR_8@131567\|VF-14 GO GO:0000127 transcription factor TFIIIC complex; GO:0000995 RNA polymerase III general transcription initiation factor activity; GO:0001650 fibrillar center; GO:0003677 DNA binding; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0006383 transcription by RNA polymerase III; GO:0006384 transcription initiation at RNA polymerase III promoter; GO:0008150 biological_process; GO:0008301 DNA... KEGG KO: K15201 \| BRITE: 00001, 03021	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa11g17680	PaHa11g17680`PaHa11g17680.1`	…O:0005737 \| GO:0008284 \| GO:0009733 \| GO:0032876 \| GO:0042023 \| DNA binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| cytoplasm \| positive regulation of cell population proliferation \| response to auxin \| negative regulation of DNA endoreduplication \| DNA endoreduplic… Show annotation evidence eggNOG Preferred name: E2FE \| Seed ortholog: 337451.A0A3S3ND33 \| eggNOG OG: E2F_TDP@131567\|s-6 GO GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0008284 positive regulation of cell population proliferation; GO:0009733 response to auxin; GO:0032876 negative regulation of DNA endoreduplication; GO:0042023 DNA endoreduplication KEGG KO: K09391 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa11g17860	PaHa11g17860`PaHa11g17860.1`	… NAM@3193\|oc-16 \| NAM@35493\|AE-6 \| S \| NAM_23_147 \| GO:0003700 \| GO:0005634 \| DNA-binding transcription factor activity \| nucleus Show annotation evidence eggNOG Preferred name: LOC104593891 \| Seed ortholog: 337451.A0A443PPN9 \| COG: S \| eggNOG OG: NAM@131567\|A-1*, NAM@3193\|oc-16, NAM@35493\|AE-6 GO GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus	eggNOGGO eggNOG-inferred	Record JBrowse Workspace
Select PaHa11g17900	PaHa11g17900`PaHa11g17900.1`	… \| postsynapse \| glutamatergic synapse \| sperm head-tail coupling apparatus \| DNA-binding transcription factor binding \| protein aggregate center \| cytoplasm protein quality control \| positive regulation of protein folding \| axonemal central apparatus assembly Show annotation evidence eggNOG Preferred name: ATJ2 \| Seed ortholog: 337451.A0A3S3R112 \| eggNOG OG: DnaJ_C@131567\|B-2 GO GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0001534 radial spoke; GO:0001671 ATPase activator activity; GO:0002088 lens development in camera-type eye; GO:0002236 detection of misfolded protein; GO:0003341 cilium movement; GO:0003351 epithelial cilium movement involved in extracellular fluid movement; GO:0003714 transcription corepressor activity; GO:0005515 protein binding; GO:0005575... KEGG KO: K09519 \| Pathway: 04141, 05164 \| BRITE: 00001, 03037, 03110	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa11g17940	PaHa11g17940`PaHa11g17940.1`	…inding transcription activator activity \| response to hypoxia \| DNA binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| regulation of cell size \| response to light stimulus \| chloroplast \| response to wounding \| response to fungus \| response to sucrose \| response to sal… Show annotation evidence eggNOG Preferred name: NAC002 \| Seed ortholog: 337451.A0A443PPR0 \| COG: S \| eggNOG OG: NAM@131567\|A-1*, NAM@3193\|APl-19, NAM@3398\|CHb-26, NAM@35493\|AE-6 GO GO:0000976 transcription cis-regulatory region binding; GO:0001216 DNA-binding transcription activator activity; GO:0001666 response to hypoxia; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0008361 regulation of cell size; GO:0009416 response to light stimulus; GO:0009507 chloroplast; GO:0009611 response to wounding; GO:0009620...	eggNOGGO eggNOG-inferred	Record JBrowse Workspace
Select PaHa11g17960	PaHa11g17960`PaHa11g17960.1`	…793 \| GO:0043078 \| GO:0090406 \| transcription cis-regulatory region binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| embryo development ending in seed dormancy \| polar nucleus \| pollen tube Show annotation evidence eggNOG Preferred name: AGL80 \| Seed ortholog: 337451.A0A443PPP8 \| COG: S \| eggNOG OG: SRF-TF@131567\|A-1*, SRF-TF@2759\|C-2!, SRF-TF@3398\|gg-20 GO GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0009793 embryo development ending in seed dormancy; GO:0043078 polar nucleus; GO:0090406 pollen tube KEGG KO: K04378, K04454, K09260, K09261, K09262, K09264, K09265, K12412, K19807, K19808, K27808 \| Pathway: 04010, 04011, 04013, 04022, 04111, 04371, 04921, 04928, 05166, 05202, 05203, 05418 \| BRITE: 00001, 03000, 03021, 04131	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace

Functional Annotation Search

2,418 genes for “transcription factor”

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