Functional Annotation Search

Functional discovery

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Search integrated eggNOG, Gene Ontology, and KEGG evidence with phrases such as fatty acid, lipid metabolism, kinase, or transcription factor.

33,382: Hass annotations
3+: indexed evidence types

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2,418 genes for “transcription factor”

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Select	Gene	Matched annotation	Evidence	Actions
Select PaHa09g16260	PaHa09g16260`PaHa09g16260.1`	…regulatory region binding \| transcription corepressor binding \| DNA binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| nucleolus \| regulation of DNA-templated transcription \| response to light intensity \| chloroplast organization \| regulation of flower development \| ve… Show annotation evidence eggNOG Preferred name: AP2 \| Seed ortholog: 337451.A0A3S3NW26 \| COG: S \| eggNOG OG: AP2@131567\|Eo-12, AP2@33090\|Xr-18, AP2@3398\|DRe-29, AP2@58023\|AYn-23 GO GO:0000976 transcription cis-regulatory region binding; GO:0001222 transcription corepressor binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005730 nucleolus; GO:0006355 regulation of DNA-templated transcription; GO:0009642 response to light intensity; GO:0009658 chloroplast organization; GO:0009909 regulation of flower... KEGG KO: K09284 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa09g16290	PaHa09g16290`PaHa09g16290.1`	…087 \| GO:0048364 \| GO:0090057 \| transcription cis-regulatory region binding \| DNA-binding transcription factor activity \| nucleus \| nucleolus \| regulation of DNA-templated transcription \| zinc ion binding \| phloem or xylem histogenesis \| root development \| root radial pattern formation Show annotation evidence eggNOG Preferred name: LOC104588659 \| Seed ortholog: 337451.A0A3S3R7B9 \| COG: S \| eggNOG OG: zf-Dof@131567\|A-1*, zf-Dof@3193\|Bv-8, zf-Dof@33090\|d-5, zf-Dof@3398\|Eb-10, zf-Dof@58023\|DA-9 GO GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0005730 nucleolus; GO:0006355 regulation of DNA-templated transcription; GO:0008270 zinc ion binding; GO:0010087 phloem or xylem histogenesis; GO:0048364 root development; GO:0090057 root radial pattern formation	eggNOGGO eggNOG-inferred	Record JBrowse Workspace
Select PaHa09g16340	PaHa09g16340`PaHa09g16340.1`	…mycetes \| innate immune response-activating signaling pathway \| DNA binding \| DNA-binding transcription factor activity \| mRNA binding \| protein binding \| nucleus \| defense response \| response to cold \| response to water deprivation \| response to light stimulus \| response to virus \| plant-type hyper… Show annotation evidence eggNOG Preferred name: LOC104647504 \| Seed ortholog: 337451.A0A3S3NI34 \| COG: COG5635 \| eggNOG OG: NB-ARC@131567\|AC-6, NB-ARC@35493\|AYU-22 GO GO:0000166 nucleotide binding; GO:0002229 defense response to oomycetes; GO:0002239 response to oomycetes; GO:0002758 innate immune response-activating signaling pathway; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0003729 mRNA binding; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006952 defense response; GO:0009409 response to cold; GO:0009414 response to water... KEGG EC: ec:2.7.1.107 \| KO: K00901 \| Pathway: 00561, 00564, 01100, 01110, 04070 \| BRITE: 00001, 01000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa09g16350	PaHa09g16350`PaHa09g16350.1`	…mycetes \| innate immune response-activating signaling pathway \| DNA binding \| DNA-binding transcription factor activity \| mRNA binding \| protein binding \| nucleus \| defense response \| response to cold \| response to water deprivation \| response to light stimulus \| response to virus \| plant-type hyper… Show annotation evidence eggNOG Preferred name: LOC104647504 \| Seed ortholog: 337451.A0A3S3NI34 \| COG: COG5635 \| eggNOG OG: NB-ARC@131567\|AC-6, NB-ARC@35493\|AYU-22 GO GO:0000166 nucleotide binding; GO:0002229 defense response to oomycetes; GO:0002239 response to oomycetes; GO:0002758 innate immune response-activating signaling pathway; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0003729 mRNA binding; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006952 defense response; GO:0009409 response to cold; GO:0009414 response to water... KEGG EC: ec:2.7.1.107 \| KO: K00901 \| Pathway: 00561, 00564, 01100, 01110, 04070 \| BRITE: 00001, 01000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa09g16390	PaHa09g16390`PaHa09g16390.1`	…515 \| GO:0005634 \| GO:0019760 \| transcription cis-regulatory region binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| glucosinolate metabolic process Show annotation evidence eggNOG Preferred name: NFYB8 \| Seed ortholog: 337451.A0A3S3Q0A2 \| COG: COG2036 \| eggNOG OG: CBFD_NFYB_HMF@131567\|BS-10, CBFD_NFYB_HMF@2759\|GM-15, CBFD_NFYB_HMF@33090\|Bcs-31 GO GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0019760 glucosinolate metabolic process KEGG EC: ec:6.5.1.3 \| KO: K08065 \| Pathway: 04612, 05152, 05166 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa09g16540	PaHa09g16540`PaHa09g16540.1`	…ing \| RNA polymerase II cis-regulatory region sequence-specific DNA binding \| DNA-binding transcription factor activity, RNA polymerase II-specific \| cis-regulatory region sequence-specific DNA binding \| DNA-binding transcription repressor activity, RNA polymerase II-specific \| DNA-binding transcrip… Show annotation evidence eggNOG Preferred name: AGL82 \| Seed ortholog: 337451.A0A443PXR5 \| COG: S \| eggNOG OG: SRF-TF@131567\|A-1*, SRF-TF@1437183\|JX-16!, SRF-TF@2759\|C-2!, SRF-TF@3398\|EM-14 GO GO:0000086 G2/M transition of mitotic cell cycle; GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000165 MAPK cascade; GO:0000785 chromatin; GO:0000900 mRNA regulatory element binding translation repressor activity; GO:0000976 transcription cis-regulatory region binding; GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding; GO:0000978 RNA polymerase... KEGG KO: K04378, K04454, K09260, K09261, K09262, K09264, K09265, K12412, K19807, K19808, K27808 \| Pathway: 04010, 04011, 04013, 04022, 04111, 04371, 04921, 04928, 05166, 05202, 05203, 05418 \| BRITE: 00001, 03000, 03021, 04131	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa09g16800	PaHa09g16800`PaHa09g16800.1`	… of X chromosome \| establishment of skin barrier \| RNA polymerase II-specific DNA-binding transcription factor binding \| mitotic spindle \| positive regulation of protein deacetylation \| negative regulation of miRNA transcription \| cellular response to Thyroglobulin triiodothyronine \| sequence-specif… Show annotation evidence eggNOG Preferred name: LOC103706673 \| Seed ortholog: 337451.A0A3S4NGM2 \| COG: S \| eggNOG OG: Myb_DNA-binding@131567\|KR-16, Myb_DNA-binding@2759\|ja-21 GO GO:0000118 histone deacetylase complex; GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000785 chromatin; GO:0000976 transcription cis-regulatory region binding; GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding; GO:0001701 in utero embryonic development; GO:0002155 regulation of thyroid hormone receptor signaling pathway; GO:0002361 CD4-positive,... KEGG KO: K04650, K06065 \| Pathway: 01522, 04330, 04350, 04919, 05169, 05202 \| BRITE: 00001, 01009, 03036	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa09g16900	PaHa09g16900`PaHa09g16900.1`	PaHa09g16900 \| PaHa09g16900.1 \| ESP4 \| 337451.A0A443PXV9 \| SYMPK_PTA1_N@2759\|A-1 \| SYMPK_PTA1_N@3398\|Gn-13 \| Symplekin_C@2759\|A-1 \| Symplekin_C@3398\|Io-19 \| S \| K06100 \| 03015 \| 00001 \| 03019 \| 03021 \| SYMPK_PTA1_N_101_321 \| Symplekin_C_1082_1260 \| GO... Show annotation evidence eggNOG Preferred name: ESP4 \| Seed ortholog: 337451.A0A443PXV9 \| COG: S \| eggNOG OG: SYMPK_PTA1_N@2759\|A-1, SYMPK_PTA1_N@3398\|Gn-13, Symplekin_C@2759\|A-1, Symplekin_C@3398\|Io-19 GO GO:0003674 molecular_function; GO:0003723 RNA binding; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005737 cytoplasm; GO:0005829 cytosol; GO:0005847 mRNA cleavage and polyadenylation specificity factor complex; GO:0005849 mRNA cleavage factor complex; GO:0005886 plasma membrane; GO:0006398 mRNA 3'-end processing by stem-loop binding and cleavage; GO... KEGG KO: K06100 \| Pathway: 03015 \| BRITE: 00001, 03019, 03021	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa09g17110	PaHa09g17110`PaHa09g17110.1`	…GO:0016132 \| GO:0042803 \| GO:0043565 \| GO:0045893 \| GO:0051511 \| GO:2000024 \| DNA-binding transcription factor activity \| protein binding \| nucleus \| regulation of DNA-templated transcription \| brassinosteroid mediated signaling pathway \| response to nitrate \| regulation of phosphate transport \| cel… Show annotation evidence eggNOG Preferred name: PHL1 \| Seed ortholog: 337451.A0A3S4PW84 \| COG: S \| eggNOG OG: Myb_CC_LHEQLE@131567\|A-1*, Myb_CC_LHEQLE@1437183\|Gc-16, Myb_CC_LHEQLE@33090\|AO-11, Myb_DNA-binding@131567\|dl-20, Myb_DNA-binding@2759\|pK-22, Myb_DNA-binding@33090\|Ctb-35! GO GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009742 brassinosteroid mediated signaling pathway; GO:0010167 response to nitrate; GO:0010966 regulation of phosphate transport; GO:0016036 cellular response to phosphate starvation; GO:0016132 brassinosteroid biosynthetic process; GO:0042803 protein... KEGG EC: ec:6.3.4.5 \| KO: K01940 \| Pathway: 00220, 00250, 01100, 01110, 01230 \| Module: M00029, M00844, M00845, M00978 \| BRITE: 00001, 01000, 04147	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa09g17150	PaHa09g17150`PaHa09g17150.1`	… \| postsynapse \| glutamatergic synapse \| sperm head-tail coupling apparatus \| DNA-binding transcription factor binding \| protein aggregate center \| cytoplasm protein quality control \| positive regulation of protein folding \| axonemal central apparatus assembly Show annotation evidence eggNOG Preferred name: BnaAnng28460D \| Seed ortholog: 337451.A0A443PXX6 \| COG: S \| eggNOG OG: DnaJ@131567\|Cwn-23, DnaJ@2759\|MXw-33, DnaJ@3398\|aZP-42, DnaJ@35493\|YnB-41, DnaJ_C@131567\|B-2, DnaJ_C@3398\|ub-20, DnaJ_C@35493\|ek-18 GO GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0001534 radial spoke; GO:0001671 ATPase activator activity; GO:0002088 lens development in camera-type eye; GO:0002236 detection of misfolded protein; GO:0003341 cilium movement; GO:0003351 epithelial cilium movement involved in extracellular fluid movement; GO:0003714 transcription corepressor activity; GO:0005515 protein binding; GO:0005575... KEGG KO: K09510 \| Pathway: 04141, 05164 \| BRITE: 00001, 03110	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa09g17730	PaHa09g17730`PaHa09g17730.1`	…GO:0005694 \| GO:0006338 \| GO:0042054 \| GO:0043565 \| GO:0045814 \| GO:0140938 \| DNA-binding transcription factor activity \| nucleus \| chromosome \| chromatin remodeling \| histone methyltransferase activity \| sequence-specific DNA binding \| negative regulation of gene expression, epigenetic \| histone H3… Show annotation evidence eggNOG Preferred name: SUVR5 \| Seed ortholog: 337451.A0A3S4PWC7 \| COG: S \| eggNOG OG: Pre-SET@131567\|A-1*, Pre-SET@2759\|Y-5!, Pre-SET@35493\|Bm-9, SET@131567\|BQN-21, SET@2759\|DTq-26, zf-C2H2_3rep@2759\|A-1, zf-TRM13_CCCH@2759\|A-1 GO GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0005694 chromosome; GO:0006338 chromatin remodeling; GO:0042054 histone methyltransferase activity; GO:0043565 sequence-specific DNA binding; GO:0045814 negative regulation of gene expression, epigenetic; GO:0140938 histone H3 methyltransferase activity KEGG EC: ec:2.1.1.225, ec:2.1.1.355, ec:2.1.1.357, ec:2.1.1.362, ec:2.1.1.368, ec:3.2.1.4 \| KO: K10511, K11419, K11420, K11429, K11433, K15446, K19357, K24405 \| Pathway: 00310, 00500, 01100, 04211 \| BRITE: 00001, 01000, 03000, 03016, 03036, 04121	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa09g17800	PaHa09g17800`PaHa09g17800.1`	…ing \| RNA polymerase II cis-regulatory region sequence-specific DNA binding \| DNA-binding transcription factor activity, RNA polymerase II-specific \| cis-regulatory region sequence-specific DNA binding \| RNA polymerase III general transcription initiation factor binding \| core promoter sequence-spec… Show annotation evidence eggNOG Preferred name: LOC104587390 \| Seed ortholog: 337451.A0A3S3R5H2 \| COG: S \| eggNOG OG: BTB@131567\|pg-17, BTB@2759\|AAM-18!, BTB@3193\|Dga-27 GO GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000228 nuclear chromosome; GO:0000242 pericentriolar material; GO:0000381 regulation of alternative mRNA splicing, via spliceosome; GO:0000781 chromosome, telomeric region; GO:0000785 chromatin; GO:0000792 heterochromatin; GO:0000793 condensed chromosome; GO:0000794 condensed nuclear chromosome; GO:0000902 cell morphogenesis; GO:0000976... KEGG EC: ec:1.2.1.16, ec:1.2.1.20, ec:1.2.1.79 \| KO: K00135, K02174, K09042, K09191, K09228, K09237, K10055, K10456, K10457, K10468, K10477, K10478, K10484, K10486, K10488, K10489, K10490, K10491, K10492, K10493, K10494, K10495, K10496, K10497, K10498, K10499, K10500, K10501, K10502, K10503, K10504, K10505, K10506, K10507, K10508, K10509, K10510, K10511, K10512, K10513, K10514, K10515, K10516, K10517, K10518, K10519,...	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa09g17810	PaHa09g17810`PaHa09g17810.1`	…634 \| GO:0009965 \| GO:0048363 \| transcription cis-regulatory region binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| leaf morphogenesis \| mucilage pectin metabolic process Show annotation evidence eggNOG Preferred name: LOC104587389 \| Seed ortholog: 337451.A0A443PY10 \| COG: S \| eggNOG OG: Homeobox_KN@131567\|A-1, Homeobox_KN@1437183\|jN-20, Homeobox_KN@2759\|C-2!, Homeobox_KN@3398\|Ly-15, Homeobox_KN@58023\|Dh-11, POX@131567\|A-1, POX@3193\|V-7, POX@3398\|CX-14 GO GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0009965 leaf morphogenesis; GO:0048363 mucilage pectin metabolic process KEGG EC: ec:2.1.1.354 \| KO: K09355, K09359, K15610, K15611, K15613, K16670, K16671, K16672, K19383, K19553, K19554, K22748, K24889, K24890, K24891 \| Pathway: 00310, 01100, 04113, 04148, 04350, 04391, 04550, 05202 \| BRITE: 00001, 01000, 03000, 03036	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa09g18040	PaHa09g18040`PaHa09g18040.1`	…33 \| GO:0048364 \| transcription cis-regulatory region binding \| DNA binding \| DNA-binding transcription factor activity \| nucleus \| response to auxin \| root development Show annotation evidence eggNOG Preferred name: ATHB-40 \| Seed ortholog: 337451.A0A443PY42 \| COG: S \| eggNOG OG: Homeodomain@131567\|XU-17, Homeodomain@2759\|ACU-20!, Homeodomain@3193\|EZV-29, Homeodomain@3398\|FTv-30, Homeodomain@35493\|BwQ-25 GO GO:0000976 transcription cis-regulatory region binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0009733 response to auxin; GO:0048364 root development KEGG KO: K09338 \| Pathway: 04113, 04148, 04927, 04934, 05202 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa09g18100	PaHa09g18100`PaHa09g18100.1`	…y region binding \| somitogenesis \| response to molecule of oomycetes origin \| DNA-binding transcription factor activity \| protein binding \| nucleus \| cytoplasm \| glucose metabolic process \| regulation of DNA-templated transcription \| regulation of transcription by RNA polymerase II \| fatty acid meta… Show annotation evidence eggNOG Preferred name: GBF1 \| Seed ortholog: 337451.A0A3S4PWE6 \| COG: S \| eggNOG OG: MFMR@131221\|F-3, MFMR@131567\|A-1, MFMR_assoc@131567\|A-1, MFMR_assoc@3398\|E-3, bZIP_1@131567\|iz-20, bZIP_1@3193\|Elm-36, bZIP_1@33090\|DGn-33 GO GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000976 transcription cis-regulatory region binding; GO:0001756 somitogenesis; GO:0002240 response to molecule of oomycetes origin; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0006006 glucose metabolic process; GO:0006355 regulation of DNA-templated... KEGG KO: K09060 \| Pathway: 04022, 04024, 04148, 04151, 04152, 04211, 04261, 04380, 04612, 04668, 04710, 04713, 04714, 04725, 04728, 04911, 04915, 04916, 04918, 04922, 04924, 04925, 04926, 04927, 04928, 04931, 04934, 04935, 04962, 05016, 05020, 05030, 05031, 05034, 05152, 05161, 05163, 05165, 05166, 05167, 05202, 05203, 05207, 05215 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa09g18160	PaHa09g18160`PaHa09g18160.1`	…GO:0003700 \| GO:0005515 \| GO:0005634 \| GO:0006355 \| GO:0009937 \| GO:0010336 \| DNA-binding transcription factor activity \| protein binding \| nucleus \| regulation of DNA-templated transcription \| regulation of gibberellic acid mediated signaling pathway \| gibberellic acid homeostasis Show annotation evidence eggNOG Preferred name: MGP \| Seed ortholog: 337451.A0A443PY40 \| COG: S \| eggNOG OG: zf-C2H2@131567\|qO-18, zf-C2H2@2759\|AFG-19, zf-C2H2@3193\|NKa-33 GO GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009937 regulation of gibberellic acid mediated signaling pathway; GO:0010336 gibberellic acid homeostasis KEGG KO: K25869 \| Pathway: 04391, 05168 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa09g18420	PaHa09g18420`PaHa09g18420.1`	…515 \| GO:0005634 \| GO:0006355 \| transcription cis-regulatory region binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| regulation of DNA-templated transcription Show annotation evidence eggNOG Preferred name: SCL4 \| Seed ortholog: 337451.A0A443PY77 \| COG: S \| eggNOG OG: GRAS@131567\|n-8, GRAS@3193\|CI-12 GO GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription	eggNOGGO eggNOG-inferred	Record JBrowse Workspace
Select PaHa09g18730	PaHa09g18730`PaHa09g18730.1`	…K27746 \| 00001 \| 03000 \| GRAS_30_395 \| GO:0003700 \| GO:0005634 \| GO:0010014 \| DNA-binding transcription factor activity \| nucleus \| meristem initiation Show annotation evidence eggNOG Preferred name: SCL18 \| Seed ortholog: 337451.A0A443PYA5 \| COG: S \| eggNOG OG: GRAS@131567\|n-8, GRAS@3193\|HB-15 GO GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0010014 meristem initiation KEGG KO: K27746 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa09g18790	PaHa09g18790`PaHa09g18790.1`	…42 \| GO:0030010 \| transcription cis-regulatory region binding \| DNA binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| regulation of DNA-templated transcription \| response to cold \| pollen development \| pollen germination \| longitudinal axis specification \| establishme… Show annotation evidence eggNOG Preferred name: WRKY2 \| Seed ortholog: 337451.A0A443PY91 \| COG: S \| eggNOG OG: WRKY@131567\|A-1*, WRKY@2759\|Uo-17, WRKY@33090\|AiE-26 GO GO:0000976 transcription cis-regulatory region binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009409 response to cold; GO:0009555 pollen development; GO:0009846 pollen germination; GO:0009942 longitudinal axis specification; GO:0030010 establishment of cell polarity KEGG KO: K18835 \| Pathway: 04626 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa09g19060	PaHa09g19060`PaHa09g19060.1`	PaHa09g19060 \| PaHa09g19060.1 \| LOC104611337 \| 337451.A0A443PYC1 \| ABC2_membrane@131567\|O-4 \| ABC2_membrane@2759\|BwZ-22 \| ABC2_membrane@3193\|FfM-27 \| ABC2_membrane@3398\|GZP-28 \| ABC2_membrane@35493\|Dzg-25 \| ABC2_membrane_7@131567\|C-2 \| ABC2_membrane_7@2759... Show annotation evidence eggNOG Preferred name: LOC104611337 \| Seed ortholog: 337451.A0A443PYC1 \| COG: COG1716 \| eggNOG OG: ABC2_membrane@131567\|O-4, ABC2_membrane@2759\|BwZ-22, ABC2_membrane@3193\|FfM-27, ABC2_membrane@3398\|GZP-28, ABC2_membrane@35493\|Dzg-25, ABC2_membrane_7@131567\|C-2, ABC2_membrane_7@2759\|Lq-14, ABC2_membrane_7@3193\|aI-18, ABC2_membrane_7@3398\|fF-19, ABC2_membrane_7@35493\|Sx-16, ABC_tran\|3E97J9@2759, ABC_tran\|3E97J9@3398, ABC... GO GO:0000139 Golgi membrane; GO:0002040 sprouting angiogenesis; GO:0005515 protein binding; GO:0005524 ATP binding; GO:0005543 phospholipid binding; GO:0005654 nucleoplasm; GO:0005737 cytoplasm; GO:0005739 mitochondrion; GO:0005768 endosome; GO:0005789 endoplasmic reticulum membrane; GO:0005794 Golgi apparatus; GO:0005886 plasma membrane; GO:0006355 regulation of DNA-templated transcription; GO:0006641 triglyceride... KEGG KO: K05681 \| Pathway: 02010 \| BRITE: 00001, 02000, 04090, 04147	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa09g19120	PaHa09g19120`PaHa09g19120.1`	…-regulatory region binding \| regulation of cell growth \| molecular_function \| DNA-binding transcription factor activity \| protein binding \| cellular_component \| nucleus \| nuclear envelope \| nucleoplasm \| cytoplasm \| vacuolar membrane \| endoplasmic reticulum \| cytosol \| plasma membrane \| endoplasmic … Show annotation evidence eggNOG Preferred name: LOC116199562 \| Seed ortholog: 337451.A0A3S3PQP6 \| COG: S \| eggNOG OG: Ank_4@131567\|CR-12, Ank_4@2759\|Rf-19 GO GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000976 transcription cis-regulatory region binding; GO:0001558 regulation of cell growth; GO:0003674 molecular_function; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005635 nuclear envelope; GO:0005654 nucleoplasm; GO:0005737 cytoplasm; GO:0005774... KEGG KO: K06867 \| Pathway: 01523, 04010, 04014, 04024, 04062, 04064, 04066, 04071, 04151, 04210, 04211, 04218, 04380, 04613, 04620, 04621, 04622, 04623, 04625, 04657, 04658, 04659, 04660, 04662, 04668, 04722, 04917, 04920, 04926, 04931, 04932, 04933, 04936, 05010, 05022, 05030, 05132, 05133, 05134, 05135, 05140, 05142, 05145, 05146, 05152, 05160, 05161, 05162, 05163, 05164, 05165, 05166, 05167, 05168, 05169, 05170,...	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa09g19160	PaHa09g19160`PaHa09g19160.1`	…GO:0046685 \| GO:0046686 \| GO:0060586 \| GO:0071731 \| GO:1900706 \| GO:1990641 \| DNA-binding transcription factor activity \| protein binding \| nucleus \| cytoplasm \| regulation of DNA-templated transcription \| response to water deprivation \| response to ethylene \| regulation of ethylene-activated signal… Show annotation evidence eggNOG Preferred name: ORG3 \| Seed ortholog: 337451.A0A3S3NWF8 \| COG: S \| eggNOG OG: HLH@131567\|Zg-14!, HLH@3193\|Apu-20, HLH@33090\|AAF-17, HLH@3398\|BVC-22, HLH@35493\|AbE-19 GO GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0006355 regulation of DNA-templated transcription; GO:0009414 response to water deprivation; GO:0009723 response to ethylene; GO:0010104 regulation of ethylene-activated signaling pathway; GO:0010106 cellular response to iron ion starvation; GO:0045893 positive regulation of DNA-templated...	eggNOGGO eggNOG-inferred	Record JBrowse Workspace
Select PaHa09g19730	PaHa09g19730`PaHa09g19730.1`	PaHa09g19730 \| PaHa09g19730.1 \| LOC100808239 \| 337451.A0A3S3NWH5 \| AAA@131567\|Afu-19 \| AAA@2759\|NSR-33 \| AAA_lid_3@131567\|DL-10 \| AAA_lid_3@2759\|Xn-16 \| AAA_lid_3@3193\|NaB-40 \| AAA_lid_3@33090\|Eyw-31 \| S \| ec:1.3.5.1 \| K03061 \| 03050 \| M00009 \| M00011 \|... Show annotation evidence eggNOG Preferred name: LOC100808239 \| Seed ortholog: 337451.A0A3S3NWH5 \| COG: S \| eggNOG OG: AAA@131567\|Afu-19, AAA@2759\|NSR-33, AAA_lid_3@131567\|DL-10, AAA_lid_3@2759\|Xn-16, AAA_lid_3@3193\|NaB-40, AAA_lid_3@33090\|Eyw-31 GO GO:0000502 proteasome complex; GO:0004175 endopeptidase activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006511 ubiquitin-dependent protein catabolic process; GO:0008540 proteasome regulatory particle, base subcomplex; GO:0016887 ATP hydrolysis activity; GO:0017025 TBP-class protein binding; GO:0031625 ubiquitin protein ligase binding; GO:0036402 proteasome-activating activity; GO:0140296 general... KEGG EC: ec:1.3.5.1 \| KO: K03061 \| Pathway: 03050 \| Module: M00009, M00011, M00148 \| BRITE: 00001, 03051	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa09g19740	PaHa09g19740`PaHa09g19740.1`	…tein binding \| ribosomal large subunit binding \| regulation of RNA splicing \| DNA-binding transcription factor binding Show annotation evidence eggNOG Preferred name: LOC123157436 \| Seed ortholog: 337451.A0A3S3R7W3 \| COG: S \| eggNOG OG: HA2@131567\|Ay-8, HA2@2759\|Gg-12, Helicase_C\|KFC4E0@2759, OB_NTP_bind@131567\|C-2, OB_NTP_bind@2759\|UR-16 GO GO:0000182 rDNA binding; GO:0003723 RNA binding; GO:0003724 RNA helicase activity; GO:0003725 double-stranded RNA binding; GO:0003729 mRNA binding; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005730 nucleolus; GO:0019843 rRNA binding; GO:0042802 identical protein binding; GO:0043023 ribosomal large subunit binding; GO:0043484 regulation of RNA splicing; GO:0140297 DNA-binding transcription factor binding KEGG EC: ec:5.6.2.6 \| KO: K12818 \| Pathway: 03040 \| BRITE: 00001, 01000, 03041	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa09g19910	PaHa09g19910`PaHa09g19910.1`	…355 \| GO:0019221 \| GO:0043547 \| transcription cis-regulatory region binding \| DNA-binding transcription factor activity \| nucleus \| cytoplasm \| cytosol \| regulation of DNA-templated transcription \| cytokine-mediated signaling pathway \| positive regulation of GTPase activity Show annotation evidence eggNOG Preferred name: LOC104609301 \| Seed ortholog: 337451.A0A443PYH3 \| COG: COG1047 \| eggNOG OG: SAP@131567\|Dc-10, SAP@33090\|df-18, zf-CCCH_4@131567\|A-1*, zf-CCCH_4@2759\|Am-7 GO GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005829 cytosol; GO:0006355 regulation of DNA-templated transcription; GO:0019221 cytokine-mediated signaling pathway; GO:0043547 positive regulation of GTPase activity KEGG EC: ec:2.3.1.286 \| KO: K11416, K13107, K13152, K27706 \| Pathway: 00760, 01100 \| BRITE: 00001, 01000, 03012, 03036, 03041	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa09g20100	PaHa09g20100`PaHa09g20100.1`	…scription cis-regulatory region binding \| response to hypoxia \| DNA binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| plasma membrane \| response to fungus \| regulation of gene expression \| detection of hypoxia \| regulation of root development Show annotation evidence eggNOG Preferred name: LOC109726863 \| Seed ortholog: 337451.A0A3S3R7Z2 \| COG: S \| eggNOG OG: AP2@131567\|DU-11, AP2@3193\|KI-15, AP2@33090\|Hp-14, AP2@3398\|je-20, AP2@58023\|Vz-18 GO GO:0000976 transcription cis-regulatory region binding; GO:0001666 response to hypoxia; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005886 plasma membrane; GO:0009620 response to fungus; GO:0010468 regulation of gene expression; GO:0070483 detection of hypoxia; GO:2000280 regulation of root development KEGG KO: K09286 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa09g20140	PaHa09g20140`PaHa09g20140.1`	PaHa09g20140 \| PaHa09g20140.1 \| ARID4 \| 337451.A0A443PYK5 \| ARID@131567\|A-1* \| ARID@2759\|CG-9 \| S \| K11478 \| K11771 \| K14972 \| K15158 \| 03083 \| 04550 \| 00001 \| 03021 \| 03036 \| ARID_599_696 \| GO:0000122 \| GO:0001889 \| GO:0003674 \| GO:0005575 \| GO:0006261 \|... Show annotation evidence eggNOG Preferred name: ARID4 \| Seed ortholog: 337451.A0A443PYK5 \| COG: S \| eggNOG OG: ARID@131567\|A-1*, ARID@2759\|CG-9 GO GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0001889 liver development; GO:0003674 molecular_function; GO:0005575 cellular_component; GO:0006261 DNA-templated DNA replication; GO:0006338 chromatin remodeling; GO:0006355 regulation of DNA-templated transcription; GO:0006357 regulation of transcription by RNA polymerase II; GO:0007155 cell adhesion; GO:0007417 central nervous system... KEGG KO: K11478, K11771, K14972, K15158 \| Pathway: 03083, 04550 \| BRITE: 00001, 03021, 03036	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa09g20240	PaHa09g20240`PaHa09g20240.1`	… \| GO:0042789 \| GO:0051123 \| GO:0097550 \| RNA polymerase II complex binding \| TFIIH-class transcription factor complex binding \| single-stranded DNA binding \| RNA binding \| protein binding \| cellular_component \| nucleus \| nucleoplasm \| transcription factor TFIID complex \| transcription factor TFIIE … Show annotation evidence eggNOG Preferred name: LOC104609404 \| Seed ortholog: 337451.A0A3S3PQV2 \| COG: S \| eggNOG OG: TFA2_Winged_2@2759\|A-1, TFIIE_beta@2759\|A-1 GO GO:0000993 RNA polymerase II complex binding; GO:0001097 TFIIH-class transcription factor complex binding; GO:0003697 single-stranded DNA binding; GO:0003723 RNA binding; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005669 transcription factor TFIID complex; GO:0005673 transcription factor TFIIE complex; GO:0005730 nucleolus; GO:0005829 cytosol; GO... KEGG KO: K03137 \| Pathway: 03022 \| BRITE: 00001, 03021	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa09g20270	PaHa09g20270`PaHa09g20270.1`	…binding \| cis-regulatory region sequence-specific DNA binding \| DNA binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| regulation of DNA-templated transcription \| gravitropism \| phototropism \| response to ethylene \| response to auxin \| blue light signaling pathway \| la… Show annotation evidence eggNOG Preferred name: ARF19 \| Seed ortholog: 337451.A0A3S3NWK5 \| COG: S \| eggNOG OG: AUX_IAA@131567\|A-1, AUX_IAA@2759\|AW-7, AUX_IAA@3193\|xV-20, AUX_IAA@3398\|ANJ-22, Auxin_resp@131221\|y-7, Auxin_resp@131567\|A-1, Auxin_resp@2759\|O-4, Auxin_resp@3193\|AZ-8, Auxin_resp@3398\|FS-13, B3@131221\|yd-19, B3@131567\|A-1*, B3@3193\|AqT-23, B3@33090\|Id-12, B3@3398\|Bkp-27 GO GO:0000976 transcription cis-regulatory region binding; GO:0000987 cis-regulatory region sequence-specific DNA binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009630 gravitropism; GO:0009638 phototropism; GO:0009723 response to ethylene; GO:0009733 response to auxin; GO... KEGG KO: K14486 \| Pathway: 04075 \| BRITE: 00001	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa09g20670	PaHa09g20670`PaHa09g20670.1`	…GO:0003700 \| GO:0005515 \| GO:0005634 \| GO:0009555 \| GO:0010152 \| GO:0080092 \| DNA-binding transcription factor activity \| protein binding \| nucleus \| pollen development \| pollen maturation \| regulation of pollen tube growth Show annotation evidence eggNOG Preferred name: AGL65 \| Seed ortholog: 337451.A0A443PYQ2 \| COG: S \| eggNOG OG: SRF-TF@131567\|A-1*, SRF-TF@2759\|C-2!, SRF-TF@3398\|AON-23, SRF-TF@58023\|ai-19 GO GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0009555 pollen development; GO:0010152 pollen maturation; GO:0080092 regulation of pollen tube growth KEGG KO: K04378, K04454, K09260, K09261, K09262, K09264, K09265, K12412, K19807, K19808, K27808 \| Pathway: 04010, 04011, 04013, 04022, 04111, 04371, 04921, 04928, 05166, 05202, 05203, 05418 \| BRITE: 00001, 03000, 03021, 04131	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace

Functional Annotation Search

2,418 genes for “transcription factor”

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