Functional Annotation Search

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Search integrated eggNOG, Gene Ontology, and KEGG evidence with phrases such as fatty acid, lipid metabolism, kinase, or transcription factor.

33,382: Hass annotations
3+: indexed evidence types

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2,418 genes for “transcription factor”

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Select	Gene	Matched annotation	Evidence	Actions
Select PaHa08g04230	PaHa08g04230`PaHa08g04230.1`	… \| molecular_function \| DNA binding \| double-stranded telomeric DNA binding \| DNA-binding transcription factor activity \| telomerase activity \| protein binding \| nucleus \| nucleoplasm \| nucleolus \| spindle \| regulation of DNA-templated transcription \| telomere maintenance via telomerase \| microtubul… Show annotation evidence eggNOG Preferred name: LOC109009887 \| Seed ortholog: 337451.A0A3S3NH84 \| COG: S \| eggNOG OG: Myb_DNA-binding@131567\|jg-21, Myb_DNA-binding@2759\|uF-23 GO GO:0000723 telomere maintenance; GO:0000781 chromosome, telomeric region; GO:0000782 telomere cap complex; GO:0000783 nuclear telomere cap complex; GO:0001650 fibrillar center; GO:0001673 male germ cell nucleus; GO:0001701 in utero embryonic development; GO:0003674 molecular_function; GO:0003677 DNA binding; GO:0003691 double-stranded telomeric DNA binding; GO:0003700 DNA-binding transcription factor activity; GO... KEGG KO: K09420, K11110, K11111, K21769 \| BRITE: 00001, 03000, 03032	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa08g04610	PaHa08g04610`PaHa08g04610.1`	…364 \| GO:0048497 \| GO:0048765 \| transcription cis-regulatory region binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| plant-type cell wall modification \| cutin biosynthetic process \| cell differentiation \| cuticle development \| anthocyanin accumulation in tissues in r… Show annotation evidence eggNOG Preferred name: ANL2 \| Seed ortholog: 337451.A0A3S3N3J7 \| COG: S \| eggNOG OG: Homeodomain@131567\|Fe-12, Homeodomain@1437183\|JKv-33, Homeodomain@3193\|EBp-28, Homeodomain@3398\|Erx-29, Homeodomain@35493\|DQH-27, START@131567\|e-5, START@2759\|CM-9!, START@3398\|AxM-24, START@35493\|tP-19, START@58023\|ACB-20 GO GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0009827 plant-type cell wall modification; GO:0010143 cutin biosynthetic process; GO:0030154 cell differentiation; GO:0042335 cuticle development; GO:0043481 anthocyanin accumulation in tissues in response to UV light; GO:0048364 root development; GO... KEGG KO: K09338 \| Pathway: 04814 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa08g04800	PaHa08g04800`PaHa08g04800.1`	…O:0071491 \| transcription cis-regulatory region binding \| chromatin binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| regulation of DNA-templated transcription \| response to cold \| response to light stimulus \| response to red or far red light \| seed germination \| posi… Show annotation evidence eggNOG Preferred name: DOF3.7 \| Seed ortholog: 337451.A0A443PA67 \| COG: S \| eggNOG OG: zf-Dof@131567\|A-1*, zf-Dof@1437183\|AGE-21, zf-Dof@3193\|Bv-8, zf-Dof@33090\|d-5, zf-Dof@3398\|GQ-11, zf-Dof@58023\|DA-9 GO GO:0000976 transcription cis-regulatory region binding; GO:0003682 chromatin binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009409 response to cold; GO:0009416 response to light stimulus; GO:0009639 response to red or far red light; GO:0009845 seed germination; GO:0010030 positive regulation of...	eggNOGGO eggNOG-inferred	Record JBrowse Workspace
Select PaHa08g04820	PaHa08g04820`PaHa08g04820.1`	…ing \| RNA polymerase II cis-regulatory region sequence-specific DNA binding \| DNA-binding transcription factor activity, RNA polymerase II-specific \| cis-regulatory region sequence-specific DNA binding \| RNA polymerase III general transcription initiation factor binding \| core promoter sequence-spec… Show annotation evidence eggNOG Preferred name: TRAF2 \| Seed ortholog: 337451.A0A443PA53 \| COG: S \| eggNOG OG: BTB@131567\|pg-17, BTB@1437183\|DgX-27, BTB@2759\|AAM-18!, BTB@3193\|CdV-25 GO GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000228 nuclear chromosome; GO:0000242 pericentriolar material; GO:0000381 regulation of alternative mRNA splicing, via spliceosome; GO:0000781 chromosome, telomeric region; GO:0000785 chromatin; GO:0000792 heterochromatin; GO:0000793 condensed chromosome; GO:0000794 condensed nuclear chromosome; GO:0000902 cell morphogenesis; GO:0000976... KEGG EC: ec:1.2.1.16, ec:1.2.1.20, ec:1.2.1.79 \| KO: K00135, K02174, K09042, K09191, K09228, K09237, K10055, K10456, K10457, K10468, K10477, K10478, K10484, K10486, K10488, K10489, K10490, K10491, K10492, K10493, K10494, K10495, K10496, K10497, K10498, K10499, K10500, K10501, K10502, K10503, K10504, K10505, K10506, K10507, K10508, K10509, K10510, K10511, K10512, K10513, K10514, K10515, K10516, K10517, K10518, K10519,...	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa08g04850	PaHa08g04850`PaHa08g04850.1`	…GO:0010089 \| GO:0048316 \| GO:0048364 \| GO:0051321 \| GO:0071365 \| GO:0090058 \| DNA-binding transcription factor activity \| protein binding \| nucleus \| male meiotic nuclear division \| chloroplast \| xylem development \| seed development \| root development \| meiotic cell cycle \| cellular response to auxi… Show annotation evidence eggNOG Preferred name: LHW \| Seed ortholog: 337451.A0A443PA25 \| COG: S \| eggNOG OG: bHLH-MYC_N@131567\|A-1*, bHLH-MYC_N@2759\|B-2, bHLH-MYC_N@3193\|m-7, bHLH-MYC_N@3398\|AU-9 GO GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0007140 male meiotic nuclear division; GO:0009507 chloroplast; GO:0010089 xylem development; GO:0048316 seed development; GO:0048364 root development; GO:0051321 meiotic cell cycle; GO:0071365 cellular response to auxin stimulus; GO:0090058 metaxylem development	eggNOGGO eggNOG-inferred	Record JBrowse Workspace
Select PaHa08g05160	PaHa08g05160`PaHa08g05160.1`	…615 \| GO:0009737 \| GO:0045893 \| transcription cis-regulatory region binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| response to osmotic stress \| response to water deprivation \| response to virus \| response to abscisic acid \| positive regulation of DNA-templated tran… Show annotation evidence eggNOG Preferred name: LOC104609249 \| Seed ortholog: 337451.A0A443PA95 \| COG: S \| eggNOG OG: HALZ@131567\|X-6, HALZ@3193\|AW-10, HALZ@3398\|Bm-12, Homeodomain@131567\|XU-17, Homeodomain@1437183\|QNQ-38, Homeodomain@2759\|ACU-20!, Homeodomain@3193\|FTx-30, Homeodomain@3398\|GUF-31, Homeodomain@35493\|BwQ-25 GO GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006970 response to osmotic stress; GO:0009414 response to water deprivation; GO:0009615 response to virus; GO:0009737 response to abscisic acid; GO:0045893 positive regulation of DNA-templated transcription KEGG KO: K09338 \| Pathway: 04113, 04148, 04927, 04934, 05202 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa08g05500	PaHa08g05500`PaHa08g05500.1`	PaHa08g05500 \| PaHa08g05500.1 \| LOC123091203 \| 337451.A0A443PA57 \| TFIIIC_delta@2759\|A-1 \| WD40@131567\|ko-16 \| WD40@2759\|ANH-18 \| S \| ec:2.3.1.48 \| ec:2.7.11.1 \| ec:3.2.1.50 \| K01205 \| K07204 \| K08333 \| K10260 \| K11127 \| K11310 \| K11803 \| K12857 \| K14299 \|... Show annotation evidence eggNOG Preferred name: LOC123091203 \| Seed ortholog: 337451.A0A443PA57 \| COG: S \| eggNOG OG: TFIIIC_delta@2759\|A-1, WD40@131567\|ko-16, WD40@2759\|ANH-18 GO GO:0000995 RNA polymerase III general transcription initiation factor activity; GO:0003674 molecular_function; GO:0003677 DNA binding; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006383 transcription by RNA polymerase III; GO:0006384 transcription initiation at RNA polymerase III promoter; GO:0008150 biological_process; GO:0036408 histone H3K14 acetyltransferase activity; GO:0042791 5S class rRNA... KEGG EC: ec:2.3.1.48, ec:2.7.11.1, ec:3.2.1.50 \| KO: K01205, K07204, K08333, K10260, K11127, K11310, K11803, K12857, K14299, K14793, K24738 \| Pathway: 00531, 01100, 03013, 03040, 04120, 04136, 04140, 04142, 04150, 04213 \| Module: M00078 \| BRITE: 00001, 01000, 01001, 03009, 03019, 03021, 03032, 03036, 03041, 04121, 04131, 04147	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa08g05540	PaHa08g05540`PaHa08g05540.1`	PaHa08g05540 \| PaHa08g05540.1 \| UBP10 \| 337451.A0A3S3MQ34 \| DUSP@131567\|A-1* \| DUSP@2759\|HO-18 \| DUSP@3398\|UW-29 \| UCH@131567\|Hh-17 \| UCH@2759\|AiQ-26 \| UCH@3398\|Hhs-38 \| S \| ec:3.4.19.12 \| K11366 \| K11834 \| K11835 \| K11837 \| K11838 \| K11839 \| K11844 \|... Show annotation evidence eggNOG Preferred name: UBP10 \| Seed ortholog: 337451.A0A3S3MQ34 \| COG: S \| eggNOG OG: DUSP@131567\|A-1*, DUSP@2759\|HO-18, DUSP@3398\|UW-29, UCH@131567\|Hh-17, UCH@2759\|AiQ-26, UCH@3398\|Hhs-38 GO GO:0000244 spliceosomal tri-snRNP complex assembly; GO:0001222 transcription corepressor binding; GO:0002181 cytoplasmic translation; GO:0003674 molecular_function; GO:0004197 cysteine-type endopeptidase activity; GO:0004843 cysteine-type deubiquitinase activity; GO:0005160 transforming growth factor beta receptor binding; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005829 cytosol; GO... KEGG EC: ec:3.4.19.12 \| KO: K11366, K11834, K11835, K11837, K11838, K11839, K11844, K11848, K11855, K11858, K21343 \| Pathway: 03083, 04137, 04144 \| BRITE: 00001, 01000, 01002, 03021, 03036, 04121, 04131	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa08g05970	PaHa08g05970`PaHa08g05970.1`	…355 \| GO:0009631 \| GO:0042803 \| transcription cis-regulatory region binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| cytosol \| regulation of DNA-templated transcription \| cold acclimation \| protein homodimerization activity Show annotation evidence eggNOG Preferred name: BHLH70 \| Seed ortholog: 337451.A0A3S3N9A7 \| COG: S \| eggNOG OG: HLH@131567\|OW-12, HLH@3193\|AAN-17, HLH@3398\|Abi-19, HLH@35493\|gX-15 GO GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005829 cytosol; GO:0006355 regulation of DNA-templated transcription; GO:0009631 cold acclimation; GO:0042803 protein homodimerization activity KEGG KO: K09092, K22495 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa08g06100	PaHa08g06100`PaHa08g06100.1`	…GO:0006355 \| GO:0009908 \| GO:0043565 \| GO:0048366 \| GO:0048480 \| GO:1901371 \| DNA-binding transcription factor activity \| protein binding \| nucleus \| regulation of DNA-templated transcription \| flower development \| sequence-specific DNA binding \| leaf development \| stigma development \| regulation of… Show annotation evidence eggNOG Preferred name: BnaC03g71880D \| Seed ortholog: 337451.A0A443PAB9 \| COG: S \| eggNOG OG: B3@131567\|A-1*, B3@33090\|zE-19, B3@35493\|BDn-24, B3@58023\|CfD-31 GO GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009908 flower development; GO:0043565 sequence-specific DNA binding; GO:0048366 leaf development; GO:0048480 stigma development; GO:1901371 regulation of leaf morphogenesis KEGG KO: K09287 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa08g06490	PaHa08g06490`PaHa08g06490.1`	PaHa08g06490 \| PaHa08g06490.1 \| LOC123157969 \| 56857.A0A200QFV1 \| ABC_membrane@131567\|aH-23 \| ABC_membrane@2759\|CyF-36 \| ABC_membrane@3193\|gmW-49 \| ABC_membrane@35493\|WZp-46 \| ABC_tran\|PKFORH@131567 \| S \| ec:7.6.2.2 \| K05658 \| 02010 \| 00001 \| 01000 \| 02000 ... Show annotation evidence eggNOG Preferred name: LOC123157969 \| Seed ortholog: 56857.A0A200QFV1 \| COG: S \| eggNOG OG: ABC_membrane@131567\|aH-23, ABC_membrane@2759\|CyF-36, ABC_membrane@3193\|gmW-49, ABC_membrane@35493\|WZp-46, ABC_tran\|PKFORH@131567 GO GO:0000086 G2/M transition of mitotic cell cycle; GO:0000139 Golgi membrane; GO:0001654 eye development; GO:0001666 response to hypoxia; GO:0001894 tissue homeostasis; GO:0005515 protein binding; GO:0005524 ATP binding; GO:0005654 nucleoplasm; GO:0005737 cytoplasm; GO:0005739 mitochondrion; GO:0005768 endosome; GO:0005829 cytosol; GO:0005886 plasma membrane; GO:0005919 pleated septate junction; GO:0005925 focal... KEGG EC: ec:7.6.2.2 \| KO: K05658 \| Pathway: 02010 \| BRITE: 00001, 01000, 02000, 04090, 04147	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa08g06620	PaHa08g06620`PaHa08g06620.1`	…O:0042631 \| GO:0043565 \| GO:0045892 \| GO:2000037 \| GO:2000038 \| DNA binding \| DNA-binding transcription factor activity \| nucleus \| DNA-templated transcription \| regulation of cell size \| response to water deprivation \| trichome morphogenesis \| negative regulation of cell growth \| negative regulatio… Show annotation evidence eggNOG Preferred name: LOC103708474 \| Seed ortholog: 337451.A0A443PAK3 \| eggNOG OG: Myb_DNA-bind_4@131567\|B-2, Myb_DNA-bind_4@3193\|FG-12 GO GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0006351 DNA-templated transcription; GO:0008361 regulation of cell size; GO:0009414 response to water deprivation; GO:0010090 trichome morphogenesis; GO:0030308 negative regulation of cell growth; GO:0032876 negative regulation of DNA endoreduplication; GO:0042631 cellular response to water deprivation; GO:0043565...	eggNOGGO eggNOG-inferred	Record JBrowse Workspace
Select PaHa08g06970	PaHa08g06970`PaHa08g06970.1`	…34 \| GO:0043565 \| transcription cis-regulatory region binding \| DNA binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| sequence-specific DNA binding Show annotation evidence eggNOG Preferred name: GBF4 \| Seed ortholog: 337451.A0A443PAK7 \| COG: S \| eggNOG OG: bZIP_1@131567\|BO-8!, bZIP_1@33090\|aa-18, bZIP_1@3398\|BsB-30, bZIP_1@35493\|tI-22 GO GO:0000976 transcription cis-regulatory region binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0043565 sequence-specific DNA binding KEGG KO: K14432 \| Pathway: 04075 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa08g07010	PaHa08g07010`PaHa08g07010.1`	…nsed chromosome \| transcription cis-regulatory region binding \| DNA binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| nucleolus \| cytosol \| regulation of DNA-templated transcription \| negative regulation of cell population proliferation \| asymmetric cell division \| re… Show annotation evidence eggNOG Preferred name: BnaA09g11780D \| Seed ortholog: 337451.A0A443PAP5 \| COG: S \| eggNOG OG: Myb_DNA-binding@131221\|LYW-44, Myb_DNA-binding@131567\|AOS-27, Myb_DNA-binding@3193\|Mih-45, Myb_DNA-binding@33090\|FSl-38, Myb_DNA-binding@3398\|PHs-47, Myb_DNA-binding@35493\|IIv-41 GO GO:0000793 condensed chromosome; GO:0000976 transcription cis-regulatory region binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005730 nucleolus; GO:0005829 cytosol; GO:0006355 regulation of DNA-templated transcription; GO:0008285 negative regulation of cell population proliferation; GO:0008356 asymmetric cell division; GO... KEGG KO: K09422 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa08g07230	PaHa08g07230`PaHa08g07230.1`	PaHa08g07230 \| PaHa08g07230.1 \| LOC109002991 \| 337451.A0A443NTE7 \| CBFD_NFYB_HMF@131567\|BS-10 \| CBFD_NFYB_HMF@1437183\|CnF-35 \| CBFD_NFYB_HMF@2759\|GM-15 \| CBFD_NFYB_HMF@33090\|Bcs-31 \| COG2036 \| ec:6.5.1.3 \| K08065 \| 04612 \| 05152 \| 05166 \| 00001 \| 03000 \|... Show annotation evidence eggNOG Preferred name: LOC109002991 \| Seed ortholog: 337451.A0A443NTE7 \| COG: COG2036 \| eggNOG OG: CBFD_NFYB_HMF@131567\|BS-10, CBFD_NFYB_HMF@1437183\|CnF-35, CBFD_NFYB_HMF@2759\|GM-15, CBFD_NFYB_HMF@33090\|Bcs-31 GO GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000785 chromatin; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005667 transcription regulator complex; GO:0005721 pericentric heterochromatin; GO:0005737 cytoplasm; GO:0006109 regulation of carbohydrate metabolic process; GO:0006351 DNA-templated transcription; GO:0006355 regulation of DNA-templated... KEGG EC: ec:6.5.1.3 \| KO: K08065 \| Pathway: 04612, 05152, 05166 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa08g07520	PaHa08g07520`PaHa08g07520.1`	…GO:0010114 \| GO:0032922 \| GO:0042752 \| GO:0043153 \| GO:2000024 \| GO:2000028 \| DNA-binding transcription factor activity \| nucleus \| circadian rhythm \| response to blue light \| regulation of photomorphogenesis \| response to red light \| circadian regulation of gene expression \| regulation of circadian… Show annotation evidence eggNOG Preferred name: ASG4 \| Seed ortholog: 337451.A0A3S5WGQ2 \| COG: S \| eggNOG OG: Myb_DNA-binding@131567\|uI-23, Myb_DNA-binding@2759\|yY-24, Myb_DNA-binding@33090\|INd-41, Myb_DNA-binding@3398\|PWh-47 GO GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0007623 circadian rhythm; GO:0009637 response to blue light; GO:0010099 regulation of photomorphogenesis; GO:0010114 response to red light; GO:0032922 circadian regulation of gene expression; GO:0042752 regulation of circadian rhythm; GO:0043153 entrainment of circadian clock by photoperiod; GO:2000024 regulation of leaf development; GO... KEGG EC: ec:3.4.21.102 \| KO: K03797, K11314, K12133, K12134, K15127 \| Pathway: 04712 \| BRITE: 00001, 01000, 01002, 03000, 03021, 03036	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa08g07760	PaHa08g07760`PaHa08g07760.1`	…GO:0003700 \| GO:0005515 \| GO:0005634 \| GO:0005829 \| GO:0009506 \| GO:0048481 \| DNA-binding transcription factor activity \| protein binding \| nucleus \| cytosol \| plasmodesma \| plant ovule development Show annotation evidence eggNOG Preferred name: BEL1 \| Seed ortholog: 337451.A0A443NQY0 \| COG: S \| eggNOG OG: Homeobox_KN@131567\|A-1, Homeobox_KN@1437183\|XZ-18, Homeobox_KN@2759\|C-2!, Homeobox_KN@3398\|Lx-15, Homeobox_KN@58023\|Dh-11, POX@131567\|A-1, POX@1437183\|BX-13, POX@3193\|V-7, POX@3398\|z-10 GO GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005829 cytosol; GO:0009506 plasmodesma; GO:0048481 plant ovule development KEGG EC: ec:2.1.1.354 \| KO: K09355, K09359, K15610, K15611, K15613, K16670, K16671, K16672, K19383, K19553, K19554, K22748, K24889, K24890, K24891 \| Pathway: 00310, 01100, 04113, 04148, 04350, 04391, 04550, 05202 \| BRITE: 00001, 01000, 03000, 03036	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa08g07790	PaHa08g07790`PaHa08g07790.1`	…001 \| GO:0080112 \| GO:2000652 \| transcription cis-regulatory region binding \| DNA-binding transcription factor activity \| nucleus \| xylem development \| mucilage biosynthetic process \| seed coat development \| negative regulation of DNA-templated transcription \| mucilage extrusion from seed coat \| see… Show annotation evidence eggNOG Preferred name: KNAT7 \| Seed ortholog: 337451.A0A3S3PCN7 \| COG: S \| eggNOG OG: Homeobox_KN@131567\|A-1, Homeobox_KN@2759\|B-2, Homeobox_KN@3193\|Bz-10, KNOX1@131567\|A-1, KNOX1@33090\|C-2, KNOX1@3398\|p-7, KNOX2@131567\|A-1*, KNOX2@3193\|L-4, KNOX2@35493\|C-2 GO GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0010089 xylem development; GO:0010192 mucilage biosynthetic process; GO:0010214 seed coat development; GO:0045892 negative regulation of DNA-templated transcription; GO:0080001 mucilage extrusion from seed coat; GO:0080112 seed growth; GO:2000652 regulation of secondary cell wall...	eggNOGGO eggNOG-inferred	Record JBrowse Workspace
Select PaHa08g07890	PaHa08g07890`PaHa08g07890.1`	…ing \| RNA polymerase II cis-regulatory region sequence-specific DNA binding \| DNA-binding transcription factor activity, RNA polymerase II-specific \| cis-regulatory region sequence-specific DNA binding \| DNA-binding transcription repressor activity, RNA polymerase II-specific \| DNA-binding transcrip… Show annotation evidence eggNOG Preferred name: LOC123105942 \| Seed ortholog: 337451.A0A443PAQ6 \| COG: S \| eggNOG OG: SRF-TF@131567\|A-1*, SRF-TF@2759\|C-2! GO GO:0000086 G2/M transition of mitotic cell cycle; GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000165 MAPK cascade; GO:0000785 chromatin; GO:0000900 mRNA regulatory element binding translation repressor activity; GO:0000976 transcription cis-regulatory region binding; GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding; GO:0000978 RNA polymerase... KEGG KO: K04378, K04454, K09260, K09261, K09262, K09264, K09265, K12412, K19807, K19808, K27808 \| Pathway: 04010, 04011, 04013, 04022, 04111, 04371, 04921, 04928, 05166, 05202, 05203, 05418 \| BRITE: 00001, 03000, 03021, 04131	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa08g07940	PaHa08g07940`PaHa08g07940.1`	…ing \| RNA polymerase II cis-regulatory region sequence-specific DNA binding \| DNA-binding transcription factor activity, RNA polymerase II-specific \| cis-regulatory region sequence-specific DNA binding \| DNA-binding transcription repressor activity, RNA polymerase II-specific \| DNA-binding transcrip… Show annotation evidence eggNOG Preferred name: AGL14 \| Seed ortholog: 337451.A0A443PAR6 \| COG: S \| eggNOG OG: SRF-TF@131567\|A-1*, SRF-TF@2759\|C-2! GO GO:0000086 G2/M transition of mitotic cell cycle; GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000165 MAPK cascade; GO:0000785 chromatin; GO:0000900 mRNA regulatory element binding translation repressor activity; GO:0000976 transcription cis-regulatory region binding; GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding; GO:0000978 RNA polymerase... KEGG KO: K04378, K04454, K09260, K09261, K09262, K09264, K09265, K12412, K19807, K19808, K27808 \| Pathway: 04010, 04011, 04013, 04022, 04111, 04371, 04921, 04928, 05166, 05202, 05203, 05418 \| BRITE: 00001, 03000, 03021, 04131	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa08g08000	PaHa08g08000`PaHa08g08000.1`	…ing \| RNA polymerase II cis-regulatory region sequence-specific DNA binding \| DNA-binding transcription factor activity, RNA polymerase II-specific \| cis-regulatory region sequence-specific DNA binding \| DNA-binding transcription repressor activity, RNA polymerase II-specific \| DNA-binding transcrip… Show annotation evidence eggNOG Preferred name: LOC123105942 \| Seed ortholog: 337451.A0A443PAQ6 \| COG: S \| eggNOG OG: SRF-TF@131567\|A-1*, SRF-TF@2759\|C-2! GO GO:0000086 G2/M transition of mitotic cell cycle; GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000165 MAPK cascade; GO:0000785 chromatin; GO:0000900 mRNA regulatory element binding translation repressor activity; GO:0000976 transcription cis-regulatory region binding; GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding; GO:0000978 RNA polymerase... KEGG KO: K04378, K04454, K09260, K09261, K09262, K09264, K09265, K12412, K19807, K19808, K27808 \| Pathway: 04010, 04011, 04013, 04022, 04111, 04371, 04921, 04928, 05166, 05202, 05203, 05418 \| BRITE: 00001, 03000, 03021, 04131	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa08g08090	PaHa08g08090`PaHa08g08090.1`	…ing \| RNA polymerase II cis-regulatory region sequence-specific DNA binding \| DNA-binding transcription factor activity, RNA polymerase II-specific \| cis-regulatory region sequence-specific DNA binding \| DNA-binding transcription repressor activity, RNA polymerase II-specific \| DNA-binding transcrip… Show annotation evidence eggNOG Preferred name: LOC123105942 \| Seed ortholog: 337451.A0A443PAQ6 \| COG: S \| eggNOG OG: SRF-TF@131567\|A-1*, SRF-TF@2759\|C-2! GO GO:0000086 G2/M transition of mitotic cell cycle; GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000165 MAPK cascade; GO:0000785 chromatin; GO:0000900 mRNA regulatory element binding translation repressor activity; GO:0000976 transcription cis-regulatory region binding; GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding; GO:0000978 RNA polymerase... KEGG KO: K04378, K04454, K09260, K09261, K09262, K09264, K09265, K12412, K19807, K19808, K27808 \| Pathway: 04010, 04011, 04013, 04022, 04111, 04371, 04921, 04928, 05166, 05202, 05203, 05418 \| BRITE: 00001, 03000, 03021, 04131	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa08g08140	PaHa08g08140`PaHa08g08140.1`	…228 \| GO:0048510 \| GO:2000012 \| transcription cis-regulatory region binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| cytoplasm \| vernalization response \| maintenance of floral meristem identity \| regulation of root meristem growth \| vegetative to reproductive phase t… Show annotation evidence eggNOG Preferred name: MADS50 \| Seed ortholog: 337451.A0A3S3MWM9 \| COG: S \| eggNOG OG: K-box@131221\|AA-6, K-box@131567\|A-1, K-box@2759\|O-4, K-box@3398\|HO-11!, SRF-TF@131567\|A-1, SRF-TF@1437183\|Djk-33, SRF-TF@2759\|C-2!, SRF-TF@3398\|BYA-27 GO GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0010048 vernalization response; GO:0010076 maintenance of floral meristem identity; GO:0010082 regulation of root meristem growth; GO:0010228 vegetative to reproductive phase transition of meristem; GO:0048510 regulation of timing of... KEGG KO: K04378, K04454, K09260, K09261, K09262, K09264, K09265, K12412, K19807, K19808, K27808 \| Pathway: 04010, 04011, 04013, 04022, 04111, 04371, 04921, 04928, 05166, 05202, 05203, 05418 \| BRITE: 00001, 03000, 03021, 04131	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa08g08280	PaHa08g08280`PaHa08g08280.1`	… \| HLH@35493\|AbE-19 \| S \| HLH_96_151 \| GO:0003700 \| GO:0005634 \| GO:0006355 \| DNA-binding transcription factor activity \| nucleus \| regulation of DNA-templated transcription Show annotation evidence eggNOG Preferred name: BHLH36 \| Seed ortholog: 337451.A0A443PAT1 \| COG: S \| eggNOG OG: HLH@131567\|Zg-14!, HLH@3193\|Apu-20, HLH@33090\|AAF-17, HLH@3398\|CXq-25, HLH@35493\|AbE-19 GO GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription	eggNOGGO eggNOG-inferred	Record JBrowse Workspace
Select PaHa08g08290	PaHa08g08290`PaHa08g08290.1`	… \| HLH@35493\|AbE-19 \| S \| HLH_76_128 \| GO:0003700 \| GO:0005634 \| GO:0006355 \| DNA-binding transcription factor activity \| nucleus \| regulation of DNA-templated transcription Show annotation evidence eggNOG Preferred name: BHLH36 \| Seed ortholog: 337451.A0A443PAS3 \| COG: S \| eggNOG OG: HLH@131567\|Zg-14!, HLH@3193\|Apu-20, HLH@33090\|AAF-17, HLH@3398\|CXq-25, HLH@35493\|AbE-19 GO GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription	eggNOGGO eggNOG-inferred	Record JBrowse Workspace
Select PaHa08g08720	PaHa08g08720`PaHa08g08720.1`	…516 \| GO:0005634 \| GO:0019760 \| transcription cis-regulatory region binding \| DNA-binding transcription factor activity \| protein binding \| calmodulin binding \| nucleus \| glucosinolate metabolic process Show annotation evidence eggNOG Preferred name: WRKY21 \| Seed ortholog: 337451.A0A3S3N9M4 \| COG: S \| eggNOG OG: Plant_zn_clust@131567\|A-1, Plant_zn_clust@3193\|I-4, Plant_zn_clust@3398\|By-10, WRKY@131567\|A-1, WRKY@2759\|CB-10, WRKY@3193\|AGq-23, WRKY@33090\|Ic-14, WRKY@3398\|AOc-24 GO GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005516 calmodulin binding; GO:0005634 nucleus; GO:0019760 glucosinolate metabolic process KEGG KO: K13425 \| Pathway: 04016, 04626 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa08g08950	PaHa08g08950`PaHa08g08950.1`	…33 \| GO:0042802 \| transcription cis-regulatory region binding \| DNA binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| response to auxin \| identical protein binding Show annotation evidence eggNOG Preferred name: IAA4 \| Seed ortholog: 337451.A0A3S3MX48 \| COG: S \| eggNOG OG: AUX_IAA@131567\|A-1*, AUX_IAA@2759\|CX-9, AUX_IAA@3398\|Xn-16 GO GO:0000976 transcription cis-regulatory region binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0009733 response to auxin; GO:0042802 identical protein binding KEGG KO: K14484 \| Pathway: 04075 \| BRITE: 00001	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa08g09040	PaHa08g09040`PaHa08g09040.1`	…GO:0009649 \| GO:0019900 \| GO:0042802 \| GO:0046982 \| GO:0071215 \| GO:0071333 \| DNA-binding transcription factor activity \| protein binding \| nucleus \| cellular response to starvation \| entrainment of circadian clock \| kinase binding \| identical protein binding \| protein heterodimerization activity \| … Show annotation evidence eggNOG Preferred name: CPRF2 \| Seed ortholog: 337451.A0A443PAY7 \| COG: S \| eggNOG OG: bZIP_1@131567\|iz-20, bZIP_1@35493\|GAp-38, bZIP_C@131567\|A-1*, bZIP_C@1437183\|e-6, bZIP_C@35493\|C-2 GO GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0009267 cellular response to starvation; GO:0009649 entrainment of circadian clock; GO:0019900 kinase binding; GO:0042802 identical protein binding; GO:0046982 protein heterodimerization activity; GO:0071215 cellular response to abscisic acid stimulus; GO:0071333 cellular response to glucose stimulus KEGG KO: K25784 \| Pathway: 04022, 04024, 04148, 04151, 04152, 04211, 04261, 04380, 04612, 04668, 04710, 04713, 04714, 04725, 04728, 04911, 04915, 04916, 04918, 04922, 04924, 04925, 04926, 04927, 04928, 04931, 04934, 04935, 04962, 05016, 05020, 05030, 05031, 05034, 05152, 05161, 05163, 05165, 05166, 05167, 05202, 05203, 05207, 05215 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa08g09270	PaHa08g09270`PaHa08g09270.1`	PaHa08g09270 \| PaHa08g09270.1 \| LOC103717015 \| 4432.A0A1U8B0X3 \| UEV@131567\|A-1* \| UEV@2759\|B-2 \| UEV@3398\|BK-10 \| Vps23_core@2759\|A-1 \| Vps23_core@3398\|Cq-14 \| S \| K12183 \| 03250 \| 04144 \| 00001 \| 04131 \| 04147 \| UEV_34_151 \| Vps23_core_263_324 \| GO... Show annotation evidence eggNOG Preferred name: LOC103717015 \| Seed ortholog: 4432.A0A1U8B0X3 \| COG: S \| eggNOG OG: UEV@131567\|A-1*, UEV@2759\|B-2, UEV@3398\|BK-10, Vps23_core@2759\|A-1, Vps23_core@3398\|Cq-14 GO GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000813 ESCRT I complex; GO:0001558 regulation of cell growth; GO:0001778 plasma membrane repair; GO:0003674 molecular_function; GO:0003677 DNA binding; GO:0003714 transcription corepressor activity; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005635 nuclear envelope; GO:0005730 nucleolus; GO:0005737... KEGG KO: K12183 \| Pathway: 03250, 04144 \| BRITE: 00001, 04131, 04147	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa08g09420	PaHa08g09420`PaHa08g09420.1`	PaHa08g09420 \| PaHa08g09420.1 \| LOC104613241 \| 337451.A0A3S3N471 \| Cation_ATPase_C@131567\|CF-13 \| Cation_ATPase_C@1437183\|CeC-37 \| Cation_ATPase_C@3193\|AbH-32 \| Cation_ATPase_C@35493\|AAv-30 \| Cation_ATPase_N@131567\|z-7 \| Cation_ATPase_N@1437183\|FVL-30 \| E1... Show annotation evidence eggNOG Preferred name: LOC104613241 \| Seed ortholog: 337451.A0A3S3N471 \| COG: S \| eggNOG OG: Cation_ATPase_C@131567\|CF-13, Cation_ATPase_C@1437183\|CeC-37, Cation_ATPase_C@3193\|AbH-32, Cation_ATPase_C@35493\|AAv-30, Cation_ATPase_N@131567\|z-7, Cation_ATPase_N@1437183\|FVL-30, E1-E2_ATPase@131221\|KhZ-42, E1-E2_ATPase@131567\|Ow-19, E1-E2_ATPase@1437183\|RMc-46!, E1-E2_ATPase@35493\|Ekd-37, Hydrolase@131567\|CFH-26, Hydrolase... GO GO:0000139 Golgi membrane; GO:0000902 cell morphogenesis; GO:0001818 negative regulation of cytokine production; GO:0002119 nematode larval development; GO:0003056 regulation of vascular associated smooth muscle contraction; GO:0003407 neural retina development; GO:0005388 P-type calcium transporter activity; GO:0006357 regulation of transcription by RNA polymerase II; GO:0006816 calcium ion transport; GO:0006874... KEGG EC: ec:7.2.2.10 \| KO: K01537 \| Pathway: 04020, 04022, 04024, 04261, 04925, 04961, 04970, 04972, 04978 \| BRITE: 00001, 01000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace

Functional Annotation Search

2,418 genes for “transcription factor”

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