Functional Annotation Search

Functional discovery

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Search integrated eggNOG, Gene Ontology, and KEGG evidence with phrases such as fatty acid, lipid metabolism, kinase, or transcription factor.

33,382: Hass annotations
3+: indexed evidence types

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2,418 genes for “transcription factor”

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Select	Gene	Matched annotation	Evidence	Actions
Select PaHa05g34250	PaHa05g34250`PaHa05g34250.1`	…_194_249 \| WRKY_397_453 \| GO:0003700 \| GO:0005634 \| GO:0010214 \| GO:0090628 \| DNA-binding transcription factor activity \| nucleus \| seed coat development \| plant epidermal cell fate specification Show annotation evidence eggNOG Preferred name: WRKY44 \| Seed ortholog: 337451.A0A3S3QAL0 \| COG: S \| eggNOG OG: WRKY@131567\|A-1*, WRKY@2759\|Uo-17, WRKY@33090\|AIC-23 GO GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0010214 seed coat development; GO:0090628 plant epidermal cell fate specification KEGG KO: K18835 \| Pathway: 04626 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa05g34330	PaHa05g34330`PaHa05g34330.1`	PaHa05g34330 \| PaHa05g34330.1 \| LOC109002991 \| 337451.A0A443NTE7 \| CBFD_NFYB_HMF@131567\|BS-10 \| CBFD_NFYB_HMF@1437183\|CnF-35 \| CBFD_NFYB_HMF@2759\|GM-15 \| CBFD_NFYB_HMF@33090\|Bcs-31 \| COG2036 \| ec:6.5.1.3 \| K08065 \| 04612 \| 05152 \| 05166 \| 00001 \| 03000 \|... Show annotation evidence eggNOG Preferred name: LOC109002991 \| Seed ortholog: 337451.A0A443NTE7 \| COG: COG2036 \| eggNOG OG: CBFD_NFYB_HMF@131567\|BS-10, CBFD_NFYB_HMF@1437183\|CnF-35, CBFD_NFYB_HMF@2759\|GM-15, CBFD_NFYB_HMF@33090\|Bcs-31 GO GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000785 chromatin; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005667 transcription regulator complex; GO:0005721 pericentric heterochromatin; GO:0005737 cytoplasm; GO:0006109 regulation of carbohydrate metabolic process; GO:0006351 DNA-templated transcription; GO:0006355 regulation of DNA-templated... KEGG EC: ec:6.5.1.3 \| KO: K08065 \| Pathway: 04612, 05152, 05166 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa05g34500	PaHa05g34500`PaHa05g34500.1`	…458 \| GO:1905157 \| GO:2000306 \| transcription cis-regulatory region binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| regulation of DNA-templated transcription \| shade avoidance \| response to brassinosteroid \| photoprotection \| negative regulation of brassinosteroid m… Show annotation evidence eggNOG Preferred name: LOC104602018 \| Seed ortholog: 337451.A0A3S3MY41 \| COG: S \| eggNOG OG: zf-B_box@2759\|B-2!, zf-B_box@33090\|l-7, zf-B_box@3398\|Wb-18, zf-B_box@35493\|CD-11 GO GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009641 shade avoidance; GO:0009741 response to brassinosteroid; GO:0010117 photoprotection; GO:1900458 negative regulation of brassinosteroid mediated signaling pathway; GO:1905157 positive regulation... KEGG KO: K12135 \| Pathway: 04712 \| BRITE: 00001	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa05g34540	PaHa05g34540`PaHa05g34540.1`	… 03000 \| K-box_81_167 \| SRF-TF_10_57 \| GO:0003700 \| GO:0005634 \| GO:0010097 \| DNA-binding transcription factor activity \| nucleus \| specification of stamen identity Show annotation evidence eggNOG Preferred name: MADS16 \| Seed ortholog: 337451.A0A443NTC1 \| COG: S \| eggNOG OG: K-box@131567\|A-1, K-box@2759\|B-2, K-box@3398\|T-5, SRF-TF@131567\|A-1, SRF-TF@2759\|C-2!, SRF-TF@3193\|so-21, SRF-TF@3398\|AqH-25, SRF-TF@35493\|bP-19 GO GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0010097 specification of stamen identity KEGG KO: K09264 \| Pathway: 04010, 04011, 04013, 04022, 04111, 04371, 04921, 04928, 05166, 05202, 05203, 05418 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa05g35130	PaHa05g35130`PaHa05g35130.1`	…565 \| GO:0045892 \| GO:1901141 \| transcription cis-regulatory region binding \| DNA-binding transcription factor activity \| nucleus \| response to wounding \| sequence-specific DNA binding \| negative regulation of DNA-templated transcription \| regulation of lignin biosynthetic process Show annotation evidence eggNOG Preferred name: MYB1 \| Seed ortholog: 337451.A0A443NT65 \| COG: S \| eggNOG OG: Myb_DNA-binding@131567\|AOS-27, Myb_DNA-binding@33090\|FSl-38, Myb_DNA-binding@3398\|UUG-51, Myb_DNA-binding@35493\|KPq-43 GO GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0009611 response to wounding; GO:0043565 sequence-specific DNA binding; GO:0045892 negative regulation of DNA-templated transcription; GO:1901141 regulation of lignin biosynthetic process KEGG KO: K09422 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa05g35270	PaHa05g35270`PaHa05g35270.1`	…34 \| GO:0010043 \| transcription cis-regulatory region binding \| DNA binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| response to zinc ion Show annotation evidence eggNOG Preferred name: BZIP19 \| Seed ortholog: 337451.A0A443NT60 \| COG: S \| eggNOG OG: bZIP_2@131567\|Fg-13, bZIP_2@2759\|LL-15, bZIP_2@3193\|ADB-23 GO GO:0000976 transcription cis-regulatory region binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0010043 response to zinc ion KEGG KO: K25785 \| Pathway: 04013, 04624 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa05g35310	PaHa05g35310`PaHa05g35310.1`	…GO:0006355 \| GO:0009648 \| GO:0009909 \| GO:0009911 \| GO:0045893 \| GO:2000028 \| DNA-binding transcription factor activity \| protein binding \| nucleus \| regulation of DNA-templated transcription \| photoperiodism \| regulation of flower development \| positive regulation of flower development \| positive r… Show annotation evidence eggNOG Preferred name: FD \| Seed ortholog: 337451.A0A3S3MSN2 \| COG: S \| eggNOG OG: bZIP_1@131567\|BO-8!, bZIP_1@33090\|aZ-18 GO GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009648 photoperiodism; GO:0009909 regulation of flower development; GO:0009911 positive regulation of flower development; GO:0045893 positive regulation of DNA-templated transcription; GO:2000028 regulation of photoperiodism, flowering KEGG KO: K14432 \| Pathway: 04075 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa05g35330	PaHa05g35330`PaHa05g35330.1`	PaHa05g35330 \| PaHa05g35330.1 \| LOC107825453 \| 4096.A0A1U7Z0C3 \| CENP_T_C@131567\|A-1* \| CENP_T_C@2759\|HO-22 \| S \| ec:2.7.7.7 \| K11254 \| 04613 \| 05034 \| 05203 \| 05322 \| 00001 \| 03036 \| CENP-T_C_250_304 \| CENP-T_C_42_96 \| GO:0000325 \| GO:0000500 \| GO:0000786 ... Show annotation evidence eggNOG Preferred name: LOC107825453 \| Seed ortholog: 4096.A0A1U7Z0C3 \| COG: S \| eggNOG OG: CENP_T_C@131567\|A-1*, CENP_T_C@2759\|HO-22 GO GO:0000325 plant-type vacuole; GO:0000500 RNA polymerase I upstream activating factor complex; GO:0000786 nucleosome; GO:0003674 molecular_function; GO:0003677 DNA binding; GO:0005515 protein binding; GO:0005576 extracellular region; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005730 nucleolus; GO:0005777 peroxisome; GO:0005829 cytosol; GO:0005886 plasma membrane; GO:0006325 chromatin organization; GO:0006334... KEGG EC: ec:2.7.7.7 \| KO: K11254 \| Pathway: 04613, 05034, 05203, 05322 \| BRITE: 00001, 03036	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa05g35730	PaHa05g35730`PaHa05g35730.1`	…GO:0008284 \| GO:0009880 \| GO:0009942 \| GO:0010654 \| GO:0048825 \| GO:0090451 \| DNA-binding transcription factor activity \| nucleus \| positive regulation of cell population proliferation \| embryonic pattern specification \| longitudinal axis specification \| apical cell fate commitment \| cotyledon devel… Show annotation evidence eggNOG Preferred name: WOX5 \| Seed ortholog: 337451.A0A443NSZ0 \| COG: S \| eggNOG OG: Homeodomain@131567\|RH-16, Homeodomain@2759\|XV-17!, Homeodomain@33090\|BEn-23, Homeodomain@3398\|ByA-25 GO GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0008284 positive regulation of cell population proliferation; GO:0009880 embryonic pattern specification; GO:0009942 longitudinal axis specification; GO:0010654 apical cell fate commitment; GO:0048825 cotyledon development; GO:0090451 cotyledon boundary formation KEGG KO: K09299, K09357, K09378, K09379, K09380, K23560 \| Pathway: 04550, 05202, 05206, 05215 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa05g35770	PaHa05g35770`PaHa05g35770.1`	…transcription cis-regulatory region binding \| regionalization \| DNA binding \| DNA-binding transcription factor activity \| nucleus \| regulation of DNA-templated transcription \| response to wounding \| response to insect \| photomorphogenesis \| response to jasmonic acid \| regulation of glucosinolate bio… Show annotation evidence eggNOG Preferred name: DOF3.6 \| Seed ortholog: 337451.A0A3S3QA94 \| COG: S \| eggNOG OG: zf-Dof@131567\|A-1*, zf-Dof@1437183\|AEN-21, zf-Dof@3193\|Bv-8, zf-Dof@33090\|d-5, zf-Dof@3398\|GM-11, zf-Dof@58023\|Ea-10 GO GO:0000976 transcription cis-regulatory region binding; GO:0003002 regionalization; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009611 response to wounding; GO:0009625 response to insect; GO:0009640 photomorphogenesis; GO:0009753 response to jasmonic acid; GO:0010439 regulation of glucosinolate...	eggNOGGO eggNOG-inferred	Record JBrowse Workspace
Select PaHa05g35990	PaHa05g35990`PaHa05g35990.1`	…515 \| GO:0005634 \| GO:0006355 \| transcription cis-regulatory region binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| regulation of DNA-templated transcription Show annotation evidence eggNOG Preferred name: SCL9 \| Seed ortholog: 337451.A0A443NSX0 \| COG: S \| eggNOG OG: GRAS@131567\|Ae-10, GRAS@3398\|AAu-22 GO GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription KEGG KO: K27753 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa05g36090	PaHa05g36090`PaHa05g36090.1`	PaHa05g36090 \| PaHa05g36090.1 \| APUM2 \| 337451.A0A3S3P2N7 \| NABP@131567\|A-1* \| NABP@2759\|C-2 \| NABP@3398\|M-4 \| PUF@131567\|Dq-15 \| PUF@2759\|FE-16 \| PUF@3398\|Apn-35 \| PUF@35493\|nu-27 \| S \| ec:3.6.5.5 \| K17943 \| 04144 \| 05017 \| 00001 \| NABP_297_695 \| PUF_700... Show annotation evidence eggNOG Preferred name: APUM2 \| Seed ortholog: 337451.A0A3S3P2N7 \| COG: S \| eggNOG OG: NABP@131567\|A-1*, NABP@2759\|C-2, NABP@3398\|M-4, PUF@131567\|Dq-15, PUF@2759\|FE-16, PUF@3398\|Apn-35, PUF@35493\|nu-27 GO GO:0000278 mitotic cell cycle; GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay; GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening; GO:0000956 nuclear-transcribed mRNA catabolic process; GO:0001501 skeletal system development; GO:0001942 hair follicle development; GO:0003723 RNA binding; GO:0003729 mRNA binding; GO:0003730 mRNA 3'-UTR binding; GO:0005737 cytoplasm; GO... KEGG EC: ec:3.6.5.5 \| KO: K17943 \| Pathway: 04144, 05017 \| BRITE: 00001	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa05g36100	PaHa05g36100`PaHa05g36100.1`	…52 \| GO:0042753 \| negative regulation of transcription by RNA polymerase II \| DNA-binding transcription factor activity \| nucleus \| transcription regulator complex \| regulation of DNA-templated transcription \| circadian rhythm \| regulation of flower development \| regulation of gene expression \| regu… Show annotation evidence eggNOG Preferred name: ARR2 \| Seed ortholog: 337451.A0A443NSV1 \| eggNOG OG: Myb_DNA-binding@131567\|Se-18, Myb_DNA-binding@33090\|AYx-28 GO GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0005667 transcription regulator complex; GO:0006355 regulation of DNA-templated transcription; GO:0007623 circadian rhythm; GO:0009909 regulation of flower development; GO:0010468 regulation of gene expression; GO:0042752 regulation of circadian rhythm; GO:0042753... KEGG KO: K09422, K11111, K12860, K14491, K16166, K17613, K25749 \| Pathway: 03040, 04075, 04712 \| BRITE: 00001, 01009, 03000, 03032, 03041, 03400	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa05g36350	PaHa05g36350`PaHa05g36350.1`	…_6@3398\|BAm-25 \| S \| zf-C2H2_6_56_80 \| GO:0003700 \| GO:0005634 \| GO:0006355 \| DNA-binding transcription factor activity \| nucleus \| regulation of DNA-templated transcription Show annotation evidence eggNOG Preferred name: RBE \| Seed ortholog: 337451.A0A443P5S4 \| COG: S \| eggNOG OG: zf-C2H2_6@131567\|B-2, zf-C2H2_6@1437183\|DNj-30, zf-C2H2_6@3193\|vX-21, zf-C2H2_6@3398\|BAm-25 GO GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription	eggNOGGO eggNOG-inferred	Record JBrowse Workspace
Select PaHa05g36460	PaHa05g36460`PaHa05g36460.1`	…GO:0043565 \| GO:0045892 \| GO:0048367 \| GO:0048457 \| GO:0080006 \| GO:1905393 \| DNA-binding transcription factor activity \| protein binding \| nucleus \| cytosol \| pattern specification process \| xylem and phloem pattern formation \| maintenance of floral meristem identity \| maintenance of inflorescence … Show annotation evidence eggNOG Preferred name: BLH9 \| Seed ortholog: 337451.A0A443NSV4 \| COG: S \| eggNOG OG: Homeobox_KN@131567\|A-1, Homeobox_KN@1437183\|Xi-18, Homeobox_KN@2759\|C-2!, Homeobox_KN@3398\|Lz-15, Homeobox_KN@58023\|Dh-11, POX@131567\|A-1, POX@1437183\|AO-11, POX@3193\|R-6 GO GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005829 cytosol; GO:0007389 pattern specification process; GO:0010051 xylem and phloem pattern formation; GO:0010076 maintenance of floral meristem identity; GO:0010077 maintenance of inflorescence meristem identity; GO:0010089 xylem development; GO:0010154 fruit development; GO:0010223 secondary shoot... KEGG EC: ec:2.1.1.354 \| KO: K09355, K09359, K15610, K15611, K15613, K16670, K16671, K16672, K19383, K19553, K19554, K22748, K24889, K24890, K24891 \| Pathway: 00310, 01100, 04113, 04148, 04350, 04391, 04550, 05202 \| BRITE: 00001, 01000, 03000, 03036	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa05g36900	PaHa05g36900`PaHa05g36900.1`	…GO:0005515 \| GO:0005634 \| GO:0009733 \| GO:0010078 \| GO:0043565 \| GO:1902459 \| DNA-binding transcription factor activity \| protein binding \| nucleus \| response to auxin \| maintenance of root meristem identity \| sequence-specific DNA binding \| positive regulation of stem cell population maintenance Show annotation evidence eggNOG Preferred name: WOX9 \| Seed ortholog: 337451.A0A3S3MDD7 \| COG: S \| eggNOG OG: Homeodomain@131567\|RH-16, Homeodomain@2759\|XV-17!, Homeodomain@33090\|BEn-23, Homeodomain@3398\|DCr-27 GO GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0009733 response to auxin; GO:0010078 maintenance of root meristem identity; GO:0043565 sequence-specific DNA binding; GO:1902459 positive regulation of stem cell population maintenance KEGG KO: K09299, K09357, K09378, K09379, K09380, K23560 \| Pathway: 04550, 05202, 05206, 05215 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa06g00160	PaHa06g00160`PaHa06g00160.1`	…154 \| GO:0048768 \| GO:0051301 \| transcription cis-regulatory region binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| regulation of DNA-templated transcription \| circadian rhythm \| cell differentiation \| root hair cell tip growth \| cell division Show annotation evidence eggNOG Preferred name: SCL6 \| Seed ortholog: 337451.A0A3S4PFM6 \| COG: S \| eggNOG OG: GRAS@131567\|n-8, GRAS@3193\|CH-12, GRAS@3398\|JO-16, GRAS@58023\|DN-13 GO GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0007623 circadian rhythm; GO:0030154 cell differentiation; GO:0048768 root hair cell tip growth; GO:0051301 cell division KEGG KO: K27747 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa06g00340	PaHa06g00340`PaHa06g00340.1`	…634 \| GO:0005737 \| GO:0006355 \| transcription cis-regulatory region binding \| DNA-binding transcription factor activity \| nucleus \| cytoplasm \| regulation of DNA-templated transcription Show annotation evidence eggNOG Preferred name: ZAT4 \| Seed ortholog: 337451.A0A443PGB4 \| COG: S \| eggNOG OG: zf-C2H2_6@131567\|B-2, zf-C2H2_6@1437183\|Rt-17, zf-C2H2_6@3398\|DU-12 GO GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0006355 regulation of DNA-templated transcription	eggNOGGO eggNOG-inferred	Record JBrowse Workspace
Select PaHa06g00380	PaHa06g00380`PaHa06g00380.1`	…GO:0009845 \| GO:0009959 \| GO:0010187 \| GO:0010218 \| GO:0043565 \| GO:0090351 \| DNA-binding transcription factor activity \| protein binding \| nucleus \| DNA-templated transcription \| regulation of DNA-templated transcription \| response to light stimulus \| plasmodesma \| double fertilization forming a zy… Show annotation evidence eggNOG Preferred name: LOC123051871 \| Seed ortholog: 337451.A0A443PGC4 \| COG: S \| eggNOG OG: HLH@131221\|BVX-22, HLH@131567\|Zg-14!, HLH@3193\|CEo-24, HLH@33090\|AbI-19, HLH@3398\|KBj-34, HLH@35493\|AqB-20, HLH@58023\|GdY-31 GO GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006351 DNA-templated transcription; GO:0006355 regulation of DNA-templated transcription; GO:0009416 response to light stimulus; GO:0009506 plasmodesma; GO:0009567 double fertilization forming a zygote and endosperm; GO:0009637 response to blue light; GO:0009704 de-etiolation; GO:0009753 response to jasmonic... KEGG KO: K12126 \| Pathway: 04075, 04712 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa06g00540	PaHa06g00540`PaHa06g00540.1`	PaHa06g00540 \| PaHa06g00540.1 \| LOC100808239 \| 337451.A0A3S3NWH5 \| AAA@131567\|Afu-19 \| AAA@2759\|NSR-33 \| AAA_lid_3@131567\|DL-10 \| AAA_lid_3@2759\|Xn-16 \| AAA_lid_3@3193\|NaB-40 \| AAA_lid_3@33090\|Eyw-31 \| S \| ec:1.3.5.1 \| K03061 \| 03050 \| M00009 \| M00011 \|... Show annotation evidence eggNOG Preferred name: LOC100808239 \| Seed ortholog: 337451.A0A3S3NWH5 \| COG: S \| eggNOG OG: AAA@131567\|Afu-19, AAA@2759\|NSR-33, AAA_lid_3@131567\|DL-10, AAA_lid_3@2759\|Xn-16, AAA_lid_3@3193\|NaB-40, AAA_lid_3@33090\|Eyw-31 GO GO:0000502 proteasome complex; GO:0004175 endopeptidase activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006511 ubiquitin-dependent protein catabolic process; GO:0008540 proteasome regulatory particle, base subcomplex; GO:0016887 ATP hydrolysis activity; GO:0017025 TBP-class protein binding; GO:0031625 ubiquitin protein ligase binding; GO:0036402 proteasome-activating activity; GO:0140296 general... KEGG EC: ec:1.3.5.1 \| KO: K03061 \| Pathway: 03050 \| Module: M00009, M00011, M00148 \| BRITE: 00001, 03051	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa06g00660	PaHa06g00660`PaHa06g00660.1`	…700 \| GO:0005634 \| GO:0009834 \| transcription cis-regulatory region binding \| DNA-binding transcription factor activity \| nucleus \| plant-type secondary cell wall biogenesis Show annotation evidence eggNOG Preferred name: LOC110794647 \| Seed ortholog: 337451.A0A3S3QSD9 \| COG: S \| eggNOG OG: AP2@131567\|DU-11, AP2@1437183\|GWx-33, AP2@33090\|KR-15, AP2@3398\|AmB-24, AP2@58023\|ld-20 GO GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0009834 plant-type secondary cell wall biogenesis KEGG KO: K09286 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa06g00750	PaHa06g00750`PaHa06g00750.1`	…cription by RNA polymerase II \| transcription cis-regulatory region binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| regulation of DNA-templated transcription \| response to absence of light \| response to ethylene \| response to abscisic acid \| response to gibberellin … Show annotation evidence eggNOG Preferred name: KUA1 \| Seed ortholog: 337451.A0A443PG80 \| COG: S \| eggNOG OG: Myb_DNA-binding@131567\|uC-23, Myb_DNA-binding@1437183\|QCZ-48, Myb_DNA-binding@33090\|LEw-44 GO GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009646 response to absence of light; GO:0009723 response to ethylene; GO:0009737 response to abscisic acid; GO:0009739 response to... KEGG KO: K22560, K23406, K24536 \| Pathway: 03082 \| BRITE: 00001, 03036, 04121	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa06g00760	PaHa06g00760`PaHa06g00760.1`	…GO:0043565 \| GO:0044839 \| GO:0045893 \| GO:0048235 \| GO:0048555 \| GO:0055047 \| DNA-binding transcription factor activity \| nucleus \| sequence-specific DNA binding \| cell cycle G2/M phase transition \| positive regulation of DNA-templated transcription \| pollen sperm cell differentiation \| generative c… Show annotation evidence eggNOG Preferred name: DUO1 \| Seed ortholog: 337451.A0A3S4PFI2 \| COG: S \| eggNOG OG: Myb_DNA-binding@131221\|BKd-31, Myb_DNA-binding@131567\|AOS-27 GO GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0043565 sequence-specific DNA binding; GO:0044839 cell cycle G2/M phase transition; GO:0045893 positive regulation of DNA-templated transcription; GO:0048235 pollen sperm cell differentiation; GO:0048555 generative cell nucleus; GO:0055047 generative cell mitosis KEGG EC: ec:1.17.99.9 \| KO: K09422 \| Pathway: 00190, 00860, 01100, 01110, 01240, 04626 \| Module: M00154 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa06g00790	PaHa06g00790`PaHa06g00790.1`	…gion binding \| developmental process involved in reproduction \| DNA binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| shade avoidance \| response to auxin \| auxin-activated signaling pathway \| response to cytokinin \| unidimensional cell growth \| shoot system morphogene… Show annotation evidence eggNOG Preferred name: LOC104610464 \| Seed ortholog: 337451.A0A443PG61 \| COG: S \| eggNOG OG: HALZ@131567\|y-8, HALZ@3193\|Bd-11, HALZ@3398\|Ll-16, HALZ@35493\|Au-10, HD-ZIP_N@131567\|A-1*, HD-ZIP_N@3193\|d-9!, Homeodomain@131221\|HaM-32, Homeodomain@131567\|XU-17, Homeodomain@2759\|ACU-20!, Homeodomain@3193\|Tih-40, Homeodomain@3398\|fHj-46, Homeodomain@35493\|BwP-25 GO GO:0000976 transcription cis-regulatory region binding; GO:0003006 developmental process involved in reproduction; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0009641 shade avoidance; GO:0009733 response to auxin; GO:0009734 auxin-activated signaling pathway; GO:0009735 response to cytokinin; GO:0009826 unidimensional cell growth;... KEGG KO: K09338 \| Pathway: 04113, 04148, 04927, 04934, 05202 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa06g00840	PaHa06g00840`PaHa06g00840.1`	… oxygen species \| transcription cis-regulatory region binding \| DNA binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| regulation of DNA-templated transcription \| response to heat \| response to cold \| response to water deprivation \| response to nematode \| response to h… Show annotation evidence eggNOG Preferred name: ERF5 \| Seed ortholog: 337451.A0A3S3QUE3 \| eggNOG OG: AP2@131567\|Eb-12, AP2@33090\|Hk-14 GO GO:0000302 response to reactive oxygen species; GO:0000976 transcription cis-regulatory region binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009408 response to heat; GO:0009409 response to cold; GO:0009414 response to water deprivation; GO:0009624 response to nematode;... KEGG KO: K09286 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa06g00850	PaHa06g00850`PaHa06g00850.1`	… oxygen species \| transcription cis-regulatory region binding \| DNA binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| regulation of DNA-templated transcription \| response to heat \| response to cold \| response to water deprivation \| response to nematode \| response to h… Show annotation evidence eggNOG Preferred name: ERF5 \| Seed ortholog: 337451.A0A3S3QUE3 \| eggNOG OG: AP2@131567\|Eb-12, AP2@33090\|Hk-14 GO GO:0000302 response to reactive oxygen species; GO:0000976 transcription cis-regulatory region binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009408 response to heat; GO:0009409 response to cold; GO:0009414 response to water deprivation; GO:0009624 response to nematode;... KEGG KO: K09286 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa06g00860	PaHa06g00860`PaHa06g00860.1`	… oxygen species \| transcription cis-regulatory region binding \| DNA binding \| DNA-binding transcription factor activity \| protein binding \| nucleus \| regulation of DNA-templated transcription \| response to heat \| response to cold \| response to water deprivation \| response to nematode \| response to h… Show annotation evidence eggNOG Preferred name: ERF5 \| Seed ortholog: 337451.A0A3S3QUE3 \| eggNOG OG: AP2@131567\|Eb-12, AP2@33090\|Hk-14 GO GO:0000302 response to reactive oxygen species; GO:0000976 transcription cis-regulatory region binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009408 response to heat; GO:0009409 response to cold; GO:0009414 response to water deprivation; GO:0009624 response to nematode;... KEGG KO: K09286 \| BRITE: 00001, 03000	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa06g00910	PaHa06g00910`PaHa06g00910.1`	…regulatory region binding \| transcription corepressor binding \| DNA binding \| DNA-binding transcription factor activity \| protein binding \| chromatin silencing complex \| flower development \| heterochromatin formation \| PcG protein complex \| regulation of long-day photoperiodism, flowering Show annotation evidence eggNOG Preferred name: LOC101757671 \| Seed ortholog: 337451.A0A443PG55 \| COG: S \| eggNOG OG: VEFS-Box@2759\|A-1, VEFS-Box@3193\|Kk-18 GO GO:0000976 transcription cis-regulatory region binding; GO:0001222 transcription corepressor binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005677 chromatin silencing complex; GO:0009908 flower development; GO:0031507 heterochromatin formation; GO:0031519 PcG protein complex; GO:0048586 regulation of long-day photoperiodism, flowering KEGG KO: K11463 \| Pathway: 03083 \| BRITE: 00001, 03036	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa06g01080	PaHa06g01080`PaHa06g01080.1`	… \| DNA-binding transcription activator activity, RNA polymerase II-specific \| DNA-binding transcription factor activity \| protein binding \| nucleus \| regulation of DNA-templated transcription \| embryo development ending in seed dormancy \| flower development \| regulation of flower development \| regul… Show annotation evidence eggNOG Preferred name: GATA18 \| Seed ortholog: 77586.A0A0D9V3T2 \| COG: S \| eggNOG OG: GATA@131567\|A-1*, GATA@1437197\|Vk-16, GATA@2759\|x-6, GATA@3398\|Hh-13, GATA@4479\|uB-19 GO GO:0000976 transcription cis-regulatory region binding; GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009793 embryo development ending in seed dormancy; GO:0009908 flower development; GO:0009909 regulation of flower... KEGG KO: K09184, K11648, K11770, K14972, K18658, K21630 \| Pathway: 03082, 03250 \| BRITE: 00001, 01009, 03000, 03019, 03021, 03036	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace
Select PaHa06g01300	PaHa06g01300`PaHa06g01300.1`	…romatin binding \| double-stranded DNA binding \| single-stranded DNA binding \| DNA-binding transcription factor activity \| transcription coactivator activity \| RNA binding \| protein binding \| cellular_component \| extracellular region \| nucleus \| nucleoplasm \| chromosome \| polytene chromosome \| polyte… Show annotation evidence eggNOG Preferred name: SMARCE1 \| Seed ortholog: 337451.A0A3S4PFF0 \| eggNOG OG: HMG_box@131567\|Aj-7 GO GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000228 nuclear chromosome; GO:0000400 four-way junction DNA binding; GO:0000404 heteroduplex DNA loop binding; GO:0000405 bubble DNA binding; GO:0000722 telomere maintenance via recombination; GO:0000741 karyogamy; GO:0000776 kinetochore; GO:0000781 chromosome, telomeric region; GO:0000785 chromatin; GO:0000791 euchromatin; GO:0000793... KEGG EC: ec:2.1.1.354, ec:2.1.1.357 \| KO: K03004, K09272, K09273, K10802, K11295, K11297, K11424, K11651, K11680, K11830, K22483, K22748, K24650, K24660, K25507, K26796, K26957, K27246 \| Pathway: 00310, 01100, 03020, 03082, 03410, 04140, 04217, 04613, 04714, 05202, 05225 \| BRITE: 00001, 01000, 01611, 03000, 03021, 03029, 03036, 03400, 04147	eggNOGGOKEGG eggNOG-inferred	Record JBrowse Workspace

Functional Annotation Search

2,418 genes for “transcription factor”

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