section item count denominator note gene_partition Anise: total_genes 50469 50469 gene_partition Anise: species_specific_orthogroup_genes 9176 50469 gene_partition Anise: unassigned_genes 8853 50469 gene_partition Hass: total_genes 42442 42442 gene_partition Hass: species_specific_orthogroup_genes 1835 42442 gene_partition Hass: unassigned_genes 6293 42442 gene_partition West_Indian_T2T: total_genes 40629 40629 gene_partition West_Indian_T2T: species_specific_orthogroup_genes 2371 40629 gene_partition West_Indian_T2T: unassigned_genes 3598 40629 Anise_RNA strong 134 9176 Recomputed from per-gene evidence metrics Anise_RNA moderate 1987 9176 Recomputed from per-gene evidence metrics Anise_RNA weak 1189 9176 Recomputed from per-gene evidence metrics Anise_RNA no 5866 9176 Recomputed from per-gene evidence metrics Anise_RNA any_support 3310 9176 Includes weak signals Hass_RNA strong 367 9176 Recomputed from per-gene evidence metrics Hass_RNA moderate 1115 9176 Recomputed from per-gene evidence metrics Hass_RNA weak 4144 9176 Recomputed from per-gene evidence metrics Hass_RNA no 3550 9176 Recomputed from per-gene evidence metrics Hass_RNA any_support 5626 9176 Includes weak signals joint_RNA both_Anise_and_Hass 2809 9176 joint_RNA Hass_only 2817 9176 joint_RNA Anise_only 501 9176 joint_RNA neither 3049 9176 joint_RNA either 6127 9176 RNA_4x4 moderate / moderate 442 9176 RNA_4x4 moderate / no 288 9176 RNA_4x4 moderate / strong 178 9176 RNA_4x4 moderate / weak 1079 9176 RNA_4x4 no / moderate 315 9176 RNA_4x4 no / no 3049 9176 RNA_4x4 no / strong 24 9176 RNA_4x4 no / weak 2478 9176 RNA_4x4 strong / moderate 30 9176 RNA_4x4 strong / no 3 9176 RNA_4x4 strong / strong 84 9176 RNA_4x4 strong / weak 17 9176 RNA_4x4 weak / moderate 328 9176 RNA_4x4 weak / no 210 9176 RNA_4x4 weak / strong 81 9176 RNA_4x4 weak / weak 570 9176 tier Tier2b 685 9176 Original priority labels; not final genomic specificity tier Tier3 380 9176 Original priority labels; not final genomic specificity tier Exclude_TE 6239 9176 Original priority labels; not final genomic specificity tier Tier4 1066 9176 Original priority labels; not final genomic specificity tier Tier5 602 9176 Original priority labels; not final genomic specificity tier Tier2 155 9176 Original priority labels; not final genomic specificity tier Exclude_fragment_caution 28 9176 Original priority labels; not final genomic specificity tier Tier1 21 9176 Original priority labels; not final genomic specificity functional_review pass_no_TE_or_organelle_flag 164 176 functional_review TE_related 9 176 functional_review organelle_like 3 176 backsearch annotated_homolog_present 157 164 Original cumulative-coverage criteria backsearch genome_present_annotation_missing 7 164 Original cumulative-coverage criteria backsearch strict_candidates_under_original_rules 0 164 Not a genome-wide absence claim; genomic HSPs were pooled by chromosome and strand