Hass · mRNA

PaHa01g37200.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

255
bp
1:90,712,334–90,712,677
genomic location
Record overview

Feature identity

Identifier
PaHa01g37200.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
255 bp
Genomic location
1:90,712,334–90,712,677
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC110776298 | Seed ortholog: 337451.A0A3S3P2A9 | COG: S | eggNOG OG: HEAT@131567|AV-9, HEAT@2759|Fz-13, IBN_N@131567|A-1*, IBN_N@2759|BD-9, IBN_N@3193|ANN-24
Gene Ontology
GO:0000278 mitotic cell cycle; GO:0003723 RNA binding; GO:0005085 guanyl-nucleotide exchange factor activity; GO:0005515 protein binding; GO:0005525 GTP binding; GO:0005829 cytosol; GO:0006404 RNA import into nucleus; GO:0006606 protein import into nucleus; GO:0006607 NLS-bearing protein import into nucleus; GO:0006610 ribosomal protein import into nucleus; GO:0006612 protein targeting to membrane; GO:0006656 phosphatidylcholine biosynthetic process; GO:0007079 mitotic chromosome movement towards spindle pole; GO:0007080 mitotic metaphase chromosome alignment; GO:0007304 chorion-containing eggshell formation; GO:0008270 zinc ion binding; GO:0009792 embryo development ending in birth or egg hatching; GO:0019894 kinesin binding; GO:0019899 enzyme binding; GO:0019904 protein domain specific binding; GO:0030953 astral microtubule organization; GO:0035332 positive regulation of hippo signaling; GO:0040001 establishment of mitotic spindle localization; GO:0044877 protein-containing complex binding; GO:0045540 regulation of cholesterol biosynthetic process; GO:0045542 positive regulation of cholesterol biosynthetic process; GO:0045893 positive regulation of DNA-templated transcription; GO:0046822 regulation of nucleocytoplasmic transport; GO:0051170 import into nucleus; GO:0051292 nuclear pore complex assembly; GO:0051879 Hsp90 protein binding; GO:0060188 regulation of protein desumoylation; GO:0061608 nuclear import signal receptor activity; GO:0061676 importin-alpha family protein binding; GO:0090307 mitotic spindle assembly; GO:0097718 disordered domain specific binding; GO:0140142 nucleocytoplasmic carrier activity
KEGG
KO: K14293 | Pathway: 03013 | BRITE: 00001, 03009, 03036
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa01g37200.1-CDS-1-1787993825:90712334..90712346
part_of
CDSPaHa01g37200.1-CDS-1-1787993825:90712436..90712677
part_of
exonPaHa01g37200.1-exon-1-1787993825:90712334..90712346
part_of
exonPaHa01g37200.1-exon-1-1787993825:90712436..90712677
part_of