Hass · mRNA

PaHa01g36900.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

3,516
bp
1:90,077,562–90,120,385
genomic location
Record overview

Feature identity

Identifier
PaHa01g36900.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
3,516 bp
Genomic location
1:90,077,562–90,120,385
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: 25499719 | Seed ortholog: 4432.A0A1U8AQP9 | COG: S | eggNOG OG: CRM1_C@2759|A-1
Gene Ontology
GO:0000054 ribosomal subunit export from nucleus; GO:0000055 ribosomal large subunit export from nucleus; GO:0000056 ribosomal small subunit export from nucleus; GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000776 kinetochore; GO:0001878 response to yeast; GO:0005049 nuclear export signal receptor activity; GO:0005515 protein binding; GO:0005525 GTP binding; GO:0005634 nucleus; GO:0005635 nuclear envelope; GO:0005642 annulate lamellae; GO:0005643 nuclear pore; GO:0005654 nucleoplasm; GO:0005730 nucleolus; GO:0005737 cytoplasm; GO:0005816 spindle pole body; GO:0005829 cytosol; GO:0006406 mRNA export from nucleus; GO:0006409 tRNA export from nucleus; GO:0006611 protein export from nucleus; GO:0006913 nucleocytoplasmic transport; GO:0007099 centriole replication; GO:0007420 brain development; GO:0009408 response to heat; GO:0009410 response to xenobiotic stimulus; GO:0009506 plasmodesma; GO:0009553 embryo sac development; GO:0009555 pollen development; GO:0009846 pollen germination; GO:0009860 pollen tube growth; GO:0010824 regulation of centrosome duplication; GO:0015031 protein transport; GO:0016020 membrane; GO:0017070 U6 snRNA binding; GO:0019904 protein domain specific binding; GO:0030619 U1 snRNA binding; GO:0030620 U2 snRNA binding; GO:0030621 U4 snRNA binding; GO:0030623 U5 snRNA binding; GO:0031965 nuclear membrane; GO:0031981 nuclear lumen; GO:0032434 regulation of proteasomal ubiquitin-dependent protein catabolic process; GO:0032991 protein-containing complex; GO:0034399 nuclear periphery; GO:0034501 protein localization to kinetochore; GO:0034504 protein localization to nucleus; GO:0042176 regulation of protein catabolic process; GO:0042254 ribosome biogenesis; GO:0046825 regulation of protein export from nucleus; GO:0051168 nuclear export; GO:0051292 nuclear pore complex assembly; GO:0061608 nuclear import signal receptor activity; GO:0071401 cellular response to triglyceride; GO:0071528 tRNA re-export from nucleus; GO:0140297 DNA-binding transcription factor binding; GO:1900037 regulation of cellular response to hypoxia; GO:1902075 cellular response to salt; GO:1990904 ribonucleoprotein complex
KEGG
KO: K25203 | Pathway: 03013 | BRITE: 00001
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa01g36900.1-CDS-1-1787993825:90077562..90077750
part_of
CDSPaHa01g36900.1-CDS-1-1787993825:90079513..90079582
part_of
CDSPaHa01g36900.1-CDS-1-1787993825:90080424..90080620
part_of
CDSPaHa01g36900.1-CDS-1-1787993825:90081824..90081937
part_of
CDSPaHa01g36900.1-CDS-1-1787993825:90082019..90082096
part_of
CDSPaHa01g36900.1-CDS-1-1787993825:90082169..90082219
part_of
CDSPaHa01g36900.1-CDS-1-1787993825:90082312..90082419
part_of
CDSPaHa01g36900.1-CDS-1-1787993825:90083099..90083242
part_of
CDSPaHa01g36900.1-CDS-1-1787993825:90083453..90083584
part_of
CDSPaHa01g36900.1-CDS-1-1787993825:90083686..90083788
part_of
CDSPaHa01g36900.1-CDS-1-1787993825:90083932..90083996
part_of
CDSPaHa01g36900.1-CDS-1-1787993825:90084210..90084281
part_of
CDSPaHa01g36900.1-CDS-1-1787993825:90084824..90084895
part_of
CDSPaHa01g36900.1-CDS-1-1787993825:90090567..90090803
part_of
CDSPaHa01g36900.1-CDS-1-1787993825:90093897..90093972
part_of
CDSPaHa01g36900.1-CDS-1-1787993825:90097086..90097159
part_of
CDSPaHa01g36900.1-CDS-1-1787993825:90097843..90097947
part_of
CDSPaHa01g36900.1-CDS-1-1787993825:90099907..90100016
part_of
CDSPaHa01g36900.1-CDS-1-1787993825:90100303..90100365
part_of
CDSPaHa01g36900.1-CDS-1-1787993825:90100577..90100667
part_of
CDSPaHa01g36900.1-CDS-1-1787993825:90101772..90101910
part_of
CDSPaHa01g36900.1-CDS-1-1787993825:90102126..90102212
part_of
CDSPaHa01g36900.1-CDS-1-1787993825:90102296..90102407
part_of
CDSPaHa01g36900.1-CDS-1-1787993825:90109105..90109288
part_of
CDSPaHa01g36900.1-CDS-1-1787993825:90109383..90109628
part_of
CDSPaHa01g36900.1-CDS-1-1787993825:90109757..90109852
part_of
CDSPaHa01g36900.1-CDS-1-1787993825:90110018..90110089
part_of
CDSPaHa01g36900.1-CDS-1-1787993825:90112173..90112215
part_of
CDSPaHa01g36900.1-CDS-1-1787993825:90116664..90116762
part_of
CDSPaHa01g36900.1-CDS-1-1787993825:90116933..90117041
part_of
CDSPaHa01g36900.1-CDS-1-1787993825:90117980..90118067
part_of
CDSPaHa01g36900.1-CDS-1-1787993825:90120296..90120385
part_of
exonPaHa01g36900.1-exon-1-1787993825:90077562..90077750
part_of
exonPaHa01g36900.1-exon-1-1787993825:90079513..90079582
part_of
exonPaHa01g36900.1-exon-1-1787993825:90080424..90080620
part_of
exonPaHa01g36900.1-exon-1-1787993825:90081824..90081937
part_of
exonPaHa01g36900.1-exon-1-1787993825:90082019..90082096
part_of
exonPaHa01g36900.1-exon-1-1787993825:90082169..90082219
part_of
exonPaHa01g36900.1-exon-1-1787993825:90082312..90082419
part_of
exonPaHa01g36900.1-exon-1-1787993825:90083099..90083242
part_of
exonPaHa01g36900.1-exon-1-1787993825:90083453..90083584
part_of
exonPaHa01g36900.1-exon-1-1787993825:90083686..90083788
part_of
exonPaHa01g36900.1-exon-1-1787993825:90083932..90083996
part_of
exonPaHa01g36900.1-exon-1-1787993825:90084210..90084281
part_of
exonPaHa01g36900.1-exon-1-1787993825:90084824..90084895
part_of
exonPaHa01g36900.1-exon-1-1787993825:90090567..90090803
part_of
exonPaHa01g36900.1-exon-1-1787993825:90093897..90093972
part_of
exonPaHa01g36900.1-exon-1-1787993825:90097086..90097159
part_of
exonPaHa01g36900.1-exon-1-1787993825:90097843..90097947
part_of
exonPaHa01g36900.1-exon-1-1787993825:90099907..90100016
part_of
exonPaHa01g36900.1-exon-1-1787993825:90100303..90100365
part_of
exonPaHa01g36900.1-exon-1-1787993825:90100577..90100667
part_of
exonPaHa01g36900.1-exon-1-1787993825:90101772..90101910
part_of
exonPaHa01g36900.1-exon-1-1787993825:90102126..90102212
part_of
exonPaHa01g36900.1-exon-1-1787993825:90102296..90102407
part_of
exonPaHa01g36900.1-exon-1-1787993825:90109105..90109288
part_of
exonPaHa01g36900.1-exon-1-1787993825:90109383..90109628
part_of
exonPaHa01g36900.1-exon-1-1787993825:90109757..90109852
part_of
exonPaHa01g36900.1-exon-1-1787993825:90110018..90110089
part_of
exonPaHa01g36900.1-exon-1-1787993825:90112173..90112215
part_of
exonPaHa01g36900.1-exon-1-1787993825:90116664..90116762
part_of
exonPaHa01g36900.1-exon-1-1787993825:90116933..90117041
part_of
exonPaHa01g36900.1-exon-1-1787993825:90117980..90118067
part_of
exonPaHa01g36900.1-exon-1-1787993825:90120296..90120385
part_of